Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_D18
(396 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0118 - 12492206-12492415,12492746-12492816,12493611-124936... 35 0.021
04_04_0076 + 22558105-22558261,22558356-22558405,22559837-225600... 30 0.78
12_01_0060 - 499291-501228 28 2.4
11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-45... 28 2.4
10_08_0933 + 21661209-21662813 28 3.1
09_04_0338 - 16801189-16801524,16801605-16801679,16801758-168018... 27 4.1
02_01_0436 - 3166764-3166949,3167115-3167258,3167343-3167469,316... 27 4.1
11_06_0236 + 21597601-21598415,21599223-21601152,21601361-21601510 27 5.5
09_02_0196 - 5678744-5679222,5679304-5679937 27 5.5
12_02_0953 - 24736642-24736673,24737104-24737188,24737267-247373... 27 7.2
11_01_0337 - 2519732-2521093 27 7.2
03_03_0185 + 15233133-15233469,15233950-15234057,15234146-152344... 27 7.2
>09_03_0118 -
12492206-12492415,12492746-12492816,12493611-12493634,
12494061-12494114,12494803-12496345
Length = 633
Score = 35.1 bits (77), Expect = 0.021
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +3
Query: 276 IDEMGTRVDELEKNITDLMTQAGVE 350
+DEMGT++DELE+++ DL + G +
Sbjct: 594 LDEMGTKIDELEQSVNDLKAEMGTD 618
>04_04_0076 +
22558105-22558261,22558356-22558405,22559837-22560044,
22560112-22560237,22560469-22560567,22560729-22561405,
22561483-22561731,22561808-22561936,22562021-22562089,
22562183-22562256,22563086-22563098,22563361-22563468,
22563541-22563651,22563725-22563811,22564043-22564068,
22564840-22564906,22565123-22565212,22565295-22565387,
22565515-22565604,22565699-22565761,22566349-22566447
Length = 894
Score = 29.9 bits (64), Expect = 0.78
Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Frame = +3
Query: 219 LLQSMQDKFQSMSDQIINRIDE---MGTRVDELEKNITDL 329
+++S +DKF+ + +Q +N I E + T ++EL+ I +L
Sbjct: 336 MIKSAKDKFEHLQNQYVNLISENNALQTEIEELKSRIIEL 375
>12_01_0060 - 499291-501228
Length = 645
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 237 DKFQSMSDQIINRIDEMGTRVDELEKNITDLMTQAGVENEK*GFKILYQS 386
DK +SDQI ++DE+G + + T + VE+E+ +++ S
Sbjct: 529 DKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHS 578
>11_01_0059 - 444991-446908,447595-448218,448431-448861,450974-452293
Length = 1430
Score = 28.3 bits (60), Expect = 2.4
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 237 DKFQSMSDQIINRIDEMGTRVDELEKNITDLMTQAGVENEK*GFKILYQS 386
DK +SDQI ++DE+G + + T + VE+E+ +++ S
Sbjct: 1314 DKSHPLSDQIYKKLDELGLEMKTMGYEPTTEVVMFDVEDEEKEHTLVHHS 1363
>10_08_0933 + 21661209-21662813
Length = 534
Score = 27.9 bits (59), Expect = 3.1
Identities = 14/61 (22%), Positives = 30/61 (49%)
Frame = +3
Query: 141 IPTENEYSTPANDPKNMQEVTQYVQSLLQSMQDKFQSMSDQIINRIDEMGTRVDELEKNI 320
+P +++ P+N +V + SL ++ D S+SD I++ + + + E +I
Sbjct: 280 VPVDDDDDDDVGSPQNAPKVAKGFLSLYKTAGDHVPSLSDAIVDEVRRLVEVFEGEELSI 339
Query: 321 T 323
T
Sbjct: 340 T 340
>09_04_0338 -
16801189-16801524,16801605-16801679,16801758-16801831,
16801972-16802059,16802185-16802336,16802423-16802582,
16802913-16803128,16803487-16803744,16804202-16804231,
16804738-16804941,16805790-16805855
Length = 552
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +3
Query: 168 PANDPKNMQEVTQYVQSLLQSMQDKFQSMSDQIINRIDEMGTRVDELEK 314
P+ +++ T S L+ + + ++ + +RID+MG V+ L K
Sbjct: 220 PSLHQNGLEQSTNISNSTLEGLANTISNLKAEQRSRIDKMGAEVERLTK 268
>02_01_0436 -
3166764-3166949,3167115-3167258,3167343-3167469,
3167746-3167825,3167933-3168184,3168271-3168399,
3169039-3169088,3169221-3169323,3169429-3169548,
3169725-3169786,3169873-3169915,3169995-3170183,
3170299-3170367,3170460-3170539,3170648-3170723
Length = 569
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +3
Query: 150 ENEYSTPANDPKNMQEVTQYVQSLLQSMQDKFQSMSDQIINRIDEM-GTRVDELEKN 317
+ EY PA D +V + + L DKF+ M +++ +D+M + EL KN
Sbjct: 510 QREYHLPAGD---FPDVEHFKEVLGGYNIDKFEKMKPKLVQAVDDMLAYDIPELLKN 563
>11_06_0236 + 21597601-21598415,21599223-21601152,21601361-21601510
Length = 964
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/54 (27%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Frame = +3
Query: 183 KNMQEVTQYVQSLLQSMQDKFQSMSDQIINRIDEM----GTRVDELEKNITDLM 332
K+++E +++ + L+SMQ + +S+ ++++DE V EL NI D++
Sbjct: 27 KSVKEGIKFLMAELESMQPALKKVSNIPLDQLDEQVKIWSREVRELSYNIEDII 80
>09_02_0196 - 5678744-5679222,5679304-5679937
Length = 370
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 210 VQSLLQSMQDKFQSMSDQIINRIDEMGTRVDELEKNITDL-MTQAGVENE 356
+ +LL + ++ + ID+ RV ELE +TDL + Q +E E
Sbjct: 117 IVTLLSRWAEAVDDFYEEALLEIDDQQRRVGELESEVTDLTVHQLQLEEE 166
>12_02_0953 - 24736642-24736673,24737104-24737188,24737267-24737386,
24737484-24737549,24737629-24737799,24737901-24737999,
24738075-24738186,24738282-24738343,24738412-24738483,
24738583-24738681,24738764-24738997,24739104-24739178,
24739299-24739386,24739478-24739638,24739734-24739841,
24739934-24741922,24742007-24742279,24742957-24743295,
24743449-24745038,24745166-24745241,24745333-24745412,
24745614-24745679,24745761-24745830,24745899-24746134,
24746149-24746319,24746915-24747097,24747176-24747241,
24747326-24747389,24747472-24747530,24747612-24747699,
24747799-24747891,24747956-24748116,24748215-24748307,
24748405-24748518,24748654-24748773,24748852-24748935,
24749016-24749171,24749518-24750154,24752874-24752929
Length = 2815
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 147 TENEYSTPANDPKNMQEVTQYVQSLLQSMQDKFQSMSDQIINRIDEMGTRVDELEK 314
T+ T A++ K + ++S L + ++ QS D+I R E+G +EK
Sbjct: 2554 TQESAVTQAHESKEQSDELMKLRSQLDELIEERQSWLDEINQRQSELGAARITIEK 2609
>11_01_0337 - 2519732-2521093
Length = 453
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +2
Query: 158 ILDTSERSKEYAGGDPICAVTSTK 229
+LD R + AGG+P+C V + K
Sbjct: 172 VLDLPSRCDDAAGGEPMCFVNAIK 195
>03_03_0185 +
15233133-15233469,15233950-15234057,15234146-15234420,
15234504-15234758,15234853-15234971,15235525-15235620,
15235705-15235810,15236039-15236179
Length = 478
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +2
Query: 143 PN*K*ILDTSERSKEYAGG-DPICAVTSTKYA 235
P+ K ++ + R Y+G D +C+VTST+YA
Sbjct: 381 PSIKTLISSGTRIWLYSGDMDAVCSVTSTQYA 412
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,152,372
Number of Sequences: 37544
Number of extensions: 145699
Number of successful extensions: 500
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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