Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_D17
(601 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 99 4e-22
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 88 8e-19
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 87 2e-18
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 85 6e-18
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 80 3e-16
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 78 9e-16
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 75 6e-15
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 75 8e-15
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 75 1e-14
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 74 1e-14
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 74 1e-14
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 74 2e-14
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 72 6e-14
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 71 1e-13
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 70 2e-13
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 69 4e-13
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 65 9e-12
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 64 1e-11
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 63 3e-11
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 62 5e-11
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 61 1e-10
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 60 2e-10
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 53 3e-08
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 49 6e-07
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom... 49 6e-07
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 47 2e-06
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 45 1e-05
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 45 1e-05
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc... 43 4e-05
SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S... 42 5e-05
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 38 0.001
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 33 0.032
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S... 28 0.91
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 27 1.6
SPAC23C4.09c |||DNA-binding TFAR19-related protein|Schizosacchar... 26 4.8
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 26 4.8
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 26 4.8
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 26 4.8
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 8.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 8.5
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 99.1 bits (236), Expect = 4e-22
Identities = 44/74 (59%), Positives = 54/74 (72%)
Frame = +2
Query: 380 NSRLVLSLSHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDI 559
NS + HG + Q ER RA+E FR G ++VAT VAS+GLD N+ HVINYD+P DI
Sbjct: 452 NSNFPATSIHGDRTQRERERALELFRSGRTSIMVATAVASRGLDIPNVTHVINYDLPTDI 511
Query: 560 ENYVHRIGRTGRAG 601
++YVHRIGRTGRAG
Sbjct: 512 DDYVHRIGRTGRAG 525
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 88.2 bits (209), Expect = 8e-19
Identities = 37/65 (56%), Positives = 48/65 (73%)
Frame = +2
Query: 407 HGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIGR 586
HG K QE+R RA+E R D+LVATD+A +G+D N+ V+NY+M + IE+Y HRIGR
Sbjct: 547 HGSKSQEQRERAIEQLRNKTADILVATDIAGRGIDIPNVSLVLNYNMAKSIEDYTHRIGR 606
Query: 587 TGRAG 601
TGRAG
Sbjct: 607 TGRAG 611
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 87.0 bits (206), Expect = 2e-18
Identities = 38/65 (58%), Positives = 47/65 (72%)
Frame = +2
Query: 407 HGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIGR 586
HG K Q+ER + FR G+ ++VATDVAS+G+D I HV NYD P + E+YVHRIGR
Sbjct: 400 HGDKAQDERDWVLNEFRTGKSPIMVATDVASRGIDVKGITHVFNYDFPGNTEDYVHRIGR 459
Query: 587 TGRAG 601
TGRAG
Sbjct: 460 TGRAG 464
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 85.4 bits (202), Expect = 6e-18
Identities = 35/65 (53%), Positives = 48/65 (73%)
Frame = +2
Query: 407 HGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIGR 586
HGGKDQ +R + ++ G DVL+AT V ++GLD ++Q V+NYD P +E+YVHR+GR
Sbjct: 699 HGGKDQHDRDSTISDYKAGVFDVLIATSVVARGLDVKSLQLVVNYDCPNHMEDYVHRVGR 758
Query: 587 TGRAG 601
TGRAG
Sbjct: 759 TGRAG 763
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 79.8 bits (188), Expect = 3e-16
Identities = 33/65 (50%), Positives = 48/65 (73%)
Frame = +2
Query: 407 HGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIGR 586
HG Q +R A+ FR+GE VL+ATD+ ++G+DF ++ VIN+D P+ + +Y+HRIGR
Sbjct: 319 HGELPQAKREEALAKFRKGEIWVLIATDLLARGIDFHGVKMVINFDFPQSVHSYIHRIGR 378
Query: 587 TGRAG 601
TGRAG
Sbjct: 379 TGRAG 383
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 78.2 bits (184), Expect = 9e-16
Identities = 36/65 (55%), Positives = 47/65 (72%)
Frame = +2
Query: 407 HGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIGR 586
HG QE+R RA+E FR G+ + L+ATDVAS+G+D I+ VINY+ P E Y+HR+GR
Sbjct: 535 HGSLSQEQRVRALEDFRDGKCNYLLATDVASRGIDIKGIEVVINYEAPATHEVYLHRVGR 594
Query: 587 TGRAG 601
T RAG
Sbjct: 595 TARAG 599
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 75.4 bits (177), Expect = 6e-15
Identities = 32/65 (49%), Positives = 45/65 (69%)
Frame = +2
Query: 407 HGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIGR 586
HGG QEER + +AF+ +K + VATDV +G+D + VINYDMP+ ++Y+HR+GR
Sbjct: 326 HGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGR 385
Query: 587 TGRAG 601
GR G
Sbjct: 386 AGRFG 390
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 74.9 bits (176), Expect = 8e-15
Identities = 31/65 (47%), Positives = 45/65 (69%)
Frame = +2
Query: 407 HGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIGR 586
HG Q+ER ++ FR+G VL+ TD+ ++G+D + VINYD+P + ENY+HRIGR
Sbjct: 291 HGEMPQKERDAIMQDFRQGNSRVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGR 350
Query: 587 TGRAG 601
+GR G
Sbjct: 351 SGRFG 355
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 74.5 bits (175), Expect = 1e-14
Identities = 33/65 (50%), Positives = 45/65 (69%)
Frame = +2
Query: 407 HGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIGR 586
H Q ER ++ FR +LVATDVAS+GLD ++Q VIN+D+P D ++Y+HR+GR
Sbjct: 289 HSEMVQRERINSLGRFRAEAAKILVATDVASRGLDIPSVQLVINFDLPRDPDDYIHRVGR 348
Query: 587 TGRAG 601
T RAG
Sbjct: 349 TARAG 353
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 74.1 bits (174), Expect = 1e-14
Identities = 33/65 (50%), Positives = 43/65 (66%)
Frame = +2
Query: 407 HGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIGR 586
HG Q R A+ F+ G + LVATDVA++GLD + VINYD+P D + Y+HR+GR
Sbjct: 316 HGQLSQSNRLGALNKFKSGARSTLVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGR 375
Query: 587 TGRAG 601
T RAG
Sbjct: 376 TARAG 380
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 74.1 bits (174), Expect = 1e-14
Identities = 31/69 (44%), Positives = 44/69 (63%)
Frame = +2
Query: 395 LSLSHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVH 574
+S HG DQ +R + FR G +L+ TD+ ++G+D + VINYD+P + ENY+H
Sbjct: 285 VSSMHGDMDQAQRDTLMHEFRTGSSRILITTDLLARGIDVQQVSLVINYDLPANRENYIH 344
Query: 575 RIGRTGRAG 601
RIGR GR G
Sbjct: 345 RIGRGGRFG 353
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 73.7 bits (173), Expect = 2e-14
Identities = 36/64 (56%), Positives = 44/64 (68%)
Frame = +2
Query: 407 HGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIGR 586
HG Q R +A+ F+ G+ VLVATDVA++GLD +Q VIN P IE+YVHRIGR
Sbjct: 447 HGDMSQGARLQALNDFKSGKCPVLVATDVAARGLDIPKVQLVINVTFPLTIEDYVHRIGR 506
Query: 587 TGRA 598
TGRA
Sbjct: 507 TGRA 510
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 72.1 bits (169), Expect = 6e-14
Identities = 33/69 (47%), Positives = 46/69 (66%)
Frame = +2
Query: 395 LSLSHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVH 574
+S +G DQE R + FR G+ ++LV TDVAS+G+D + +VINYD P + +VH
Sbjct: 373 VSKIYGSLDQEARLNEINNFRLGKTNLLVVTDVASRGIDIPLLANVINYDFPPQPKVFVH 432
Query: 575 RIGRTGRAG 601
R+GRT RAG
Sbjct: 433 RVGRTARAG 441
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 70.9 bits (166), Expect = 1e-13
Identities = 29/60 (48%), Positives = 44/60 (73%)
Frame = +2
Query: 422 QEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIGRTGRAG 601
++ER + + F G+ ++LV +D+ ++G+D AN Q+VINYD P + +YVHRIGRT RAG
Sbjct: 473 RDERKKIISRFATGDLNLLVCSDLMARGIDVANTQNVINYDPPLSVRSYVHRIGRTARAG 532
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 70.1 bits (164), Expect = 2e-13
Identities = 30/64 (46%), Positives = 44/64 (68%)
Frame = +2
Query: 407 HGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIGR 586
H DQ++R +++E F+ K VLV TDVA++G+D ++ HVI+Y +P + YVHR GR
Sbjct: 420 HAQLDQKKRLQSLEKFKNNPKGVLVCTDVAARGIDIPSVTHVIHYHVPHTADMYVHRSGR 479
Query: 587 TGRA 598
T RA
Sbjct: 480 TARA 483
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 69.3 bits (162), Expect = 4e-13
Identities = 29/65 (44%), Positives = 42/65 (64%)
Frame = +2
Query: 407 HGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIGR 586
H G +R E+FR+ + +L ATDV ++G+DF NI V+ P + ++Y+HRIGR
Sbjct: 324 HSGLTTAQRRSITESFRKCQSGILFATDVVARGMDFPNITQVVQITGPSNTDDYIHRIGR 383
Query: 587 TGRAG 601
TGRAG
Sbjct: 384 TGRAG 388
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 64.9 bits (151), Expect = 9e-12
Identities = 31/66 (46%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Frame = +2
Query: 407 HGGKDQEERSRAVEAFRRG-EKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIG 583
HG + Q RSR E F++ +K VL TD+AS+GLD N+ V+ D P D +++ HR G
Sbjct: 289 HGQQVQSNRSRNFEKFKKSNKKTVLFTTDIASRGLDIPNVDFVLQLDPPLDPKSFSHRCG 348
Query: 584 RTGRAG 601
R GRAG
Sbjct: 349 RAGRAG 354
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 216 QMREAAHRQSFLDRRTEDRESPKSATGQHKVWQKGRQV 329
Q+RE A R+ +TE ++ + A +++ W K ++V
Sbjct: 488 QVREQARRRRLEVEKTEPKKLARPAKIKNEAWSKQKEV 525
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 64.1 bits (149), Expect = 1e-11
Identities = 28/68 (41%), Positives = 43/68 (63%)
Frame = +2
Query: 392 VLSLSHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYV 571
VL L HG + Q+ R+ F EK +L+ T+VA++GLD + ++ YD P+D +Y+
Sbjct: 363 VLDL-HGKQKQQRRTNTFFEFCNAEKGILLCTNVAARGLDIPAVDWIVQYDPPDDPRDYI 421
Query: 572 HRIGRTGR 595
HR+GRT R
Sbjct: 422 HRVGRTAR 429
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 62.9 bits (146), Expect = 3e-11
Identities = 29/68 (42%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Frame = +2
Query: 407 HGGKDQEERSRAVEAFRRGEKD---VLVATDVASKGLDFANIQHVINYDMPEDIENYVHR 577
HG Q+ R+ + F E +L+ TDVA++GLD N+ V+ YD P ++Y+HR
Sbjct: 474 HGSLSQQIRTSTLNLFSSSEDSGSHILLCTDVAARGLDLPNVDLVVQYDAPFSTDDYLHR 533
Query: 578 IGRTGRAG 601
IGRT RAG
Sbjct: 534 IGRTARAG 541
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 62.5 bits (145), Expect = 5e-11
Identities = 26/63 (41%), Positives = 36/63 (57%)
Frame = +2
Query: 407 HGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIGR 586
HG + Q R+ F VL TD+ ++GLDF + VI D PED++ Y+HR+GR
Sbjct: 316 HGKQKQTTRTEVTAKFTSSRHVVLFCTDIVARGLDFPAVDWVIQLDAPEDVDTYIHRVGR 375
Query: 587 TGR 595
T R
Sbjct: 376 TAR 378
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 61.3 bits (142), Expect = 1e-10
Identities = 28/66 (42%), Positives = 40/66 (60%)
Frame = +2
Query: 404 SHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIG 583
SH Q R+R FR G LV +D+ ++G+D + VIN+D P++ E Y+HRIG
Sbjct: 311 SHAKMLQSHRNRVFHNFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIG 370
Query: 584 RTGRAG 601
R+GR G
Sbjct: 371 RSGRFG 376
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 60.1 bits (139), Expect = 2e-10
Identities = 29/70 (41%), Positives = 43/70 (61%), Gaps = 6/70 (8%)
Frame = +2
Query: 410 GGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMP------EDIENYV 571
G + +R +++FR G VLV T+V ++G+D + + V+NYDMP D + Y+
Sbjct: 384 GNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYL 443
Query: 572 HRIGRTGRAG 601
HRIGRTGR G
Sbjct: 444 HRIGRTGRFG 453
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 53.2 bits (122), Expect = 3e-08
Identities = 20/35 (57%), Positives = 29/35 (82%)
Frame = +2
Query: 497 SKGLDFANIQHVINYDMPEDIENYVHRIGRTGRAG 601
++GLDF N+ V+N+DMP + ++Y+HRIGRT RAG
Sbjct: 387 ARGLDFENVACVLNFDMPSNTKSYIHRIGRTARAG 421
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 48.8 bits (111), Expect = 6e-07
Identities = 21/65 (32%), Positives = 35/65 (53%)
Frame = +2
Query: 407 HGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIGR 586
H G ++ ER R ++ G ++VAT G+D +++ VI++ P+ +E Y GR
Sbjct: 774 HAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHHSFPKSLEGYYQETGR 833
Query: 587 TGRAG 601
GR G
Sbjct: 834 AGRDG 838
>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 834
Score = 48.8 bits (111), Expect = 6e-07
Identities = 21/61 (34%), Positives = 35/61 (57%)
Frame = +2
Query: 413 GKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIGRTG 592
G Q+ ++ V+ F++GE + L+AT + +GLD + +I YD + R+GRTG
Sbjct: 475 GMSQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMGRTG 534
Query: 593 R 595
R
Sbjct: 535 R 535
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 46.8 bits (106), Expect = 2e-06
Identities = 21/61 (34%), Positives = 33/61 (54%)
Frame = +2
Query: 413 GKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIGRTG 592
G +Q ++ ++ FR G + LVAT + +GLD + +I YD + R+GRTG
Sbjct: 514 GMNQMQQKETIDQFRAGVINTLVATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTG 573
Query: 593 R 595
R
Sbjct: 574 R 574
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 44.8 bits (101), Expect = 1e-05
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +2
Query: 410 GGKDQEERSRAVEAFRR--GEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIG 583
G EER +AFR G+ +++AT G+++ ++ V++Y +P +YV G
Sbjct: 1451 GDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETG 1510
Query: 584 RTGRAG 601
R GR G
Sbjct: 1511 RAGRDG 1516
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 44.8 bits (101), Expect = 1e-05
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Frame = +2
Query: 410 GGKDQEERSRAVEAFRR--GEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIG 583
G EER +AFR G+ +++AT G+++ ++ V++Y +P +YV G
Sbjct: 1451 GDVSDEERQMNFDAFRNANGKTRIMIATKAFGLGINYMGVRLVVHYGLPASSMDYVQETG 1510
Query: 584 RTGRAG 601
R GR G
Sbjct: 1511 RAGRDG 1516
>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
L34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 111
Score = 42.7 bits (96), Expect = 4e-05
Identities = 28/55 (50%), Positives = 33/55 (60%)
Frame = +1
Query: 112 LRGIQPARPQSVLGLWLTRKEGPVQAPFMAGVLCHKCVKQRIVRAFLIEEQKIVK 276
L+GI RP+ L +K+ VQ + G L VK RIVRAFLIEEQKIVK
Sbjct: 51 LQGIPALRPREFARLSHNQKK--VQRAY-GGCLSANAVKDRIVRAFLIEEQKIVK 102
>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
L34|Schizosaccharomyces pombe|chr 1|||Manual
Length = 112
Score = 42.3 bits (95), Expect = 5e-05
Identities = 28/55 (50%), Positives = 32/55 (58%)
Frame = +1
Query: 112 LRGIQPARPQSVLGLWLTRKEGPVQAPFMAGVLCHKCVKQRIVRAFLIEEQKIVK 276
L+GI RP+ L +K VQ + G L VK RIVRAFLIEEQKIVK
Sbjct: 51 LQGIPALRPREFARLSHNKKT--VQRAY-GGCLSANAVKDRIVRAFLIEEQKIVK 102
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 37.9 bits (84), Expect = 0.001
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Frame = +2
Query: 380 NSRLVLSLSHGGKDQEERSRA-------VEAFRRGEKDVLVATDVASKGLDFANIQHVIN 538
N R + HG DQ E S + F+ G+ +VL+AT VA +G+D + VI
Sbjct: 388 NIRAHSFIGHGPSDQGEFSMTFRRQKDTLHKFKTGKYNVLIATAVAEEGIDVPSCNLVIR 447
Query: 539 YDMPEDIENYVHRIGR 586
+++ + YV GR
Sbjct: 448 FNICRTVTQYVQSRGR 463
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 33.1 bits (72), Expect = 0.032
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +2
Query: 422 QEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIGRTGR 595
QE R E F G+ ++AT+ G+D ++ VI P + N + GR GR
Sbjct: 597 QERRKIESEMFN-GKLYGIIATNALELGIDIGSLDAVITIGFPYSLSNLRQQFGRAGR 653
>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 28.3 bits (60), Expect = 0.91
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -3
Query: 494 RRQWRPARPSPRAGKPPRRETSPPGP--YRRVRERE 393
+RQ RPA +PRAG+P RE S YRR +++
Sbjct: 92 KRQVRPA--APRAGRPEPRERSSAADAGYRRAEKKD 125
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 27.5 bits (58), Expect = 1.6
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = +2
Query: 395 LSLSHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYD-MPEDIENYV 571
+ + H G ++ R FR G+ V++AT S G++ V D + + N+
Sbjct: 1225 IGIHHSGLNRRYRQIVEVLFRCGQLTVVIATRTLSLGINMPCRTVVFLGDSLQLNALNFH 1284
Query: 572 HRIGRTGRAG 601
GR GR G
Sbjct: 1285 QAAGRAGRRG 1294
>SPAC23C4.09c |||DNA-binding TFAR19-related
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 131
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 505 SGLCEHPARDQLRHAGGYRELRAPDRED 588
S + EHPARD+LR R+ RA E+
Sbjct: 50 SQILEHPARDRLRRIALVRKDRAEAVEE 77
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 332 IYLAAFLPDFMLACCAFRTFTIFCSS 255
I+L A + + L+CC T I+CSS
Sbjct: 13 IHLKAIIEEPKLSCCHCETCRIWCSS 38
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +2
Query: 410 GGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANI 523
G + ER ++ FR+ + VLV V ++G D NI
Sbjct: 297 GETNDSERETLIQDFRKKKFPVLVNCMVLTEGTDIPNI 334
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = -2
Query: 498 LATSVATSTSFSPRRKASTARDLSSWSLP 412
L SVATST+ SPRR A + ++S S P
Sbjct: 149 LNPSVATSTNISPRRHAK-SHSVASVSSP 176
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +2
Query: 395 LSLSHGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLD 511
++L H G + +R + E F + +L+AT + G++
Sbjct: 1423 IALHHAGLTENDRKISEELFVNNKVQILIATSTLAWGVN 1461
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -2
Query: 504 PLLATSVATSTSFSPRRKASTARDLSSWSLPPCERERTSL 385
P +TS TSTS P +S+ + ++PP TS+
Sbjct: 166 PTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPTSTSSTSI 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,205,358
Number of Sequences: 5004
Number of extensions: 37914
Number of successful extensions: 132
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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