Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_D17
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       85   5e-19
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   0.99 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 85.0 bits (201), Expect = 5e-19
 Identities = 36/65 (55%), Positives = 47/65 (72%)
 Frame = +2

Query: 407 HGGKDQEERSRAVEAFRRGEKDVLVATDVASKGLDFANIQHVINYDMPEDIENYVHRIGR 586
           HG + Q +R  A+  F+ G   +LVAT VA++GLD  N+ HVINYD+P+ I+ YVHRIGR
Sbjct: 482 HGDRLQRQREEALADFKSGRMSILVATAVAARGLDIKNVSHVINYDLPKGIDEYVHRIGR 541

Query: 587 TGRAG 601
           TGR G
Sbjct: 542 TGRVG 546


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 0.99
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 516 AKSRPLLATSVATSTSFSPRRKASTARDL 430
           A S   L+ +  +STS SPR  +STA  L
Sbjct: 824 ASSPRYLSAAATSSTSTSPRPASSTAATL 852


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 401 LSHGGKDQEERSRAVEAFR 457
           +S+GGK+Q+ R  A++  +
Sbjct: 41  VSNGGKEQDFRFEAIQCLQ 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,736
Number of Sequences: 438
Number of extensions: 2947
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)