Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_D15
(399 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 56 3e-09
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 29 0.20
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 27 1.4
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c... 25 5.7
SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat protei... 24 7.6
SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz... 24 10.0
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 24 10.0
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 24 10.0
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ... 24 10.0
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 24 10.0
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 55.6 bits (128), Expect = 3e-09
Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Frame = +1
Query: 13 ISDSQKLLLYTTGNYHWYLKQTLLFNSDQKIIKLMWDNDFNISNNKKLHVLLNTGEYYTY 192
+S ++L+TTGNYHWYLK+ + N Q + + W + + + L TG+ +
Sbjct: 318 VSTENSVMLWTTGNYHWYLKKEI--NIPQNAL-ISW-------HPEHANTLYITGKNHIE 367
Query: 193 SWIWNINH--SKGKSINDDAVVVVIDGKKILVSSFKQTVVPPPMSSFETELD 342
++++ + S ND ++ VIDG +LV+ +PPPM ++ LD
Sbjct: 368 KVVFDLKYVTEFSTSPNDFGLIPVIDGSSLLVTPLSLCNIPPPMCRYKLSLD 419
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 29.5 bits (63), Expect = 0.20
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 13 ISDSQKLLLYTTGNYHWYLKQTLLFNSD 96
+ D + LL GNYHW+L + L F D
Sbjct: 1697 LGDIELLLRMEDGNYHWHLCRGLSFKED 1724
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 26.6 bits (56), Expect = 1.4
Identities = 15/59 (25%), Positives = 33/59 (55%)
Frame = +1
Query: 79 LLFNSDQKIIKLMWDNDFNISNNKKLHVLLNTGEYYTYSWIWNINHSKGKSINDDAVVV 255
L+FN + + L D+ I+ ++ ++++N + WN++ SK S+N D+++V
Sbjct: 191 LVFNGNSDDVLLSTDHLGKIAVHEFYNLVINK-----HCTSWNLDMSKSNSLNLDSIIV 244
>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 594
Score = 24.6 bits (51), Expect = 5.7
Identities = 7/26 (26%), Positives = 18/26 (69%)
Frame = +1
Query: 46 TGNYHWYLKQTLLFNSDQKIIKLMWD 123
TG+++ Y+ + +L + D+ + ++WD
Sbjct: 337 TGDHNSYVNENILPSYDKHVFDVLWD 362
>SPBC18H10.05 |||WD repeat protein Wdr44 family, WD repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 586
Score = 24.2 bits (50), Expect = 7.6
Identities = 7/20 (35%), Positives = 15/20 (75%)
Frame = +1
Query: 331 TELDTYINSVCFAPHNDNII 390
TEL+ ++++CF P ++I+
Sbjct: 334 TELEYVVSTICFYPDGESIV 353
>SPAC637.07 |moe1||translation initiation factor eIF3d
Moe1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 567
Score = 23.8 bits (49), Expect = 10.0
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = +1
Query: 94 DQKIIKLMWDNDFNISNNKKLHVLLNTGEYYTYSWIWNINHSKGKSIND 240
D I KL ++D NI + LL Y W I H GK D
Sbjct: 246 DPVIQKLALNSDANIFITDSILSLLMCSTRSVYPWDIVITHQSGKLFFD 294
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 23.8 bits (49), Expect = 10.0
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = +2
Query: 44 QLAIIIGI*NKPYYSIVIRRLLNLCGIMISIFLTTKNCMFY*ILEN 181
++AII+ P+ +++ LL +C + + N F IL N
Sbjct: 351 EMAIILKSNIDPFLELILPNLLKVCSVTKKLASQAANVTFAAILVN 396
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 23.8 bits (49), Expect = 10.0
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Frame = +1
Query: 136 ISNNKKLHVLLNTGEYYTYSWIWNINHSK------GKSIND 240
+ ++ + LN GE YSW + I SK GK+I+D
Sbjct: 2337 LQGSRSMKYALNPGEEANYSWDFPILKSKLLQVEVGKAIHD 2377
>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1877
Score = 23.8 bits (49), Expect = 10.0
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +1
Query: 148 KKLHVLLNTGEYYTYSWIWNINHSK 222
K L +LLN Y Y+W+ + H +
Sbjct: 1272 KLLIILLNNEMYMLYTWLTPVLHGR 1296
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 23.8 bits (49), Expect = 10.0
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +1
Query: 235 NDDAVVVVIDGKKILVSSFKQTVVPPPMSSFETELDTYINSVCFAP 372
ND V ++ G + S + +P P+ S + I VC++P
Sbjct: 287 NDKLVCILACGGQDRSLSIWSSALPRPLLSCQNVFQKSIGDVCWSP 332
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.133 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,699,568
Number of Sequences: 5004
Number of extensions: 33514
Number of successful extensions: 94
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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