Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_D15
         (399 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0909 + 22512313-22512474,22513151-22513465,22513539-225166...    58   2e-09
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162...    29   1.4  
10_08_0551 + 18702081-18702251,18702328-18702424,18702533-187026...    27   5.5  

>07_03_0909 +
           22512313-22512474,22513151-22513465,22513539-22516633,
           22516812-22516910,22517031-22517379
          Length = 1339

 Score = 58.4 bits (135), Expect = 2e-09
 Identities = 32/116 (27%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
 Frame = +1

Query: 37  LYTTGNYHWYLKQTLLFNSDQKIIKLMWDNDFNISNNKKLHVLLNT--GEYYTYSWIWNI 210
           +++  N HWYLKQ L +   + + +  WD        K +H++  T  G+  T+ + W  
Sbjct: 296 VWSCSNNHWYLKQELRYTKKEGV-RFYWDQ------TKPMHLICWTLGGQVITHRFAWTT 348

Query: 211 NHSKGKSINDDAVVVVIDGKKILVSSFKQTVVPPPMSSFETELDTYINSVCFAPHN 378
                 ++++ ++ +VIDG  +LV+     ++PPPMS F       +N V F  +N
Sbjct: 349 ------AVSETSIALVIDGSHVLVTPLSLGLMPPPMSLFHLTFPCAVNEVSFLSYN 398


>02_01_0246 +
           1617326-1617367,1618903-1624419,1625040-1625498,
           1625603-1625887,1626016-1626030,1626339-1626419,
           1626909-1627322,1627423-1627719,1627801-1629864
          Length = 3057

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 17/61 (27%), Positives = 31/61 (50%)
 Frame = +1

Query: 205 NINHSKGKSINDDAVVVVIDGKKILVSSFKQTVVPPPMSSFETELDTYINSVCFAPHNDN 384
           N++   G + ++  V  + + K+I  +  ++    PP ++  TEL    NS    PHND+
Sbjct: 512 NLDQEGGIADSESQVADLEEAKEIEATETEEITHQPP-AAVSTELPKEDNSTRSEPHNDD 570

Query: 385 I 387
           I
Sbjct: 571 I 571


>10_08_0551 +
           18702081-18702251,18702328-18702424,18702533-18702651,
           18702757-18702924,18703296-18703424,18703659-18703719,
           18703813-18703916,18704173-18704279,18704319-18704493,
           18704657-18704770,18704883-18704966,18705536-18705608,
           18705689-18705775,18705863-18705917,18706007-18706078,
           18706470-18706532,18706640-18706754,18706844-18706915
          Length = 621

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 301 VVPPPMSSFETELDTYINSVCFAPHN 378
           ++PP + SFE + D +INS     HN
Sbjct: 74  LLPPRVMSFEQQYDRFINSFRSLEHN 99


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.133    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,065,471
Number of Sequences: 37544
Number of extensions: 181830
Number of successful extensions: 431
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)