Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_D15
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81464-7|CAB03857.2|  338|Caenorhabditis elegans Hypothetical pr...    31   0.40 
AL032630-13|CAA21568.1|  348|Caenorhabditis elegans Hypothetical...    30   0.70 
AJ276028-1|CAC81655.1|  816|Caenorhabditis elegans TRP homlogous...    29   0.93 
AF040654-5|AAN65302.2|  816|Caenorhabditis elegans Trp (transien...    29   0.93 
AF040654-4|AAN65303.2|  886|Caenorhabditis elegans Trp (transien...    29   0.93 
U00036-15|AAK29857.1|  731|Caenorhabditis elegans Hypothetical p...    29   1.6  
AF143148-1|AAD37914.1|  315|Caenorhabditis elegans R151.8B prote...    29   1.6  
U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical pr...    27   3.7  
Z78546-3|CAB01768.2|  361|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical...    27   5.0  
Z98851-5|CAB11541.1|  596|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z98851-4|CAB11542.1|  607|Caenorhabditis elegans Hypothetical pr...    27   6.5  
U80437-10|AAN84839.1|  656|Caenorhabditis elegans Hypothetical p...    27   6.5  
Z68303-3|CAA92638.1|  248|Caenorhabditis elegans Hypothetical pr...    26   8.7  
AC024841-2|AAK68540.1|  300|Caenorhabditis elegans Hypothetical ...    26   8.7  
AC024841-1|AAK68541.1|  300|Caenorhabditis elegans Hypothetical ...    26   8.7  

>Z81464-7|CAB03857.2|  338|Caenorhabditis elegans Hypothetical
           protein C08E8.2 protein.
          Length = 338

 Score = 30.7 bits (66), Expect = 0.40
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 229 SINDDAVVVVIDGKKILVSSF-KQTVVPPPMSSFETE 336
           S+ND  V+ ++DGK    + + K  + PP M+ FE E
Sbjct: 30  SVNDAKVLKIVDGKVRATAVYSKNPIFPPNMTRFEAE 66


>AL032630-13|CAA21568.1|  348|Caenorhabditis elegans Hypothetical
           protein Y62H9A.13 protein.
          Length = 348

 Score = 29.9 bits (64), Expect = 0.70
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +1

Query: 130 FNISNNKKLHVLLNTGEYYTYSWIWNINHSKGKSINDDAVVVVIDGKKILVSSFKQTVVP 309
           + +S N +  + L   E+   SWI++ NHS G + +DD V     GKK   S  K  + P
Sbjct: 255 YALSKNAEKVLELGFQEFVLPSWIFDSNHSDGDT-DDDKVRKT--GKKSGRSKQKAPMAP 311

Query: 310 P 312
           P
Sbjct: 312 P 312


>AJ276028-1|CAC81655.1|  816|Caenorhabditis elegans TRP homlogous
           cation channel proteinprotein.
          Length = 816

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 217 CGLYSKSRNMYNILQYLIEHAVFC 146
           CGLY+  RN++NIL ++      C
Sbjct: 439 CGLYNYCRNLWNILDFITNSLYLC 462


>AF040654-5|AAN65302.2|  816|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 2, isoform a
           protein.
          Length = 816

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 217 CGLYSKSRNMYNILQYLIEHAVFC 146
           CGLY+  RN++NIL ++      C
Sbjct: 439 CGLYNYCRNLWNILDFITNSLYLC 462


>AF040654-4|AAN65303.2|  886|Caenorhabditis elegans Trp (transient
           receptor potential)channel family protein 2, isoform b
           protein.
          Length = 886

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 217 CGLYSKSRNMYNILQYLIEHAVFC 146
           CGLY+  RN++NIL ++      C
Sbjct: 439 CGLYNYCRNLWNILDFITNSLYLC 462


>U00036-15|AAK29857.1|  731|Caenorhabditis elegans Hypothetical
           protein R151.8 protein.
          Length = 731

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
 Frame = +1

Query: 73  QTLLFNSDQ--KIIKLMWDNDF-NISNN-KKLHVLLNTGEYYTYSWIWNINHSKGKSIND 240
           +T  FNS +  K +  M D+DF NI  + ++L +L+N  EY   +    +   K K +  
Sbjct: 130 KTFFFNSAKAYKSLLAMTDDDFANIPRDARELFLLINACEYKRKTVNMKVIVEKLKELVF 189

Query: 241 DAVVVVIDGKKIL 279
           +  VVV  G+K++
Sbjct: 190 EGTVVVRAGRKLV 202


>AF143148-1|AAD37914.1|  315|Caenorhabditis elegans R151.8B protein
           protein.
          Length = 315

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
 Frame = +1

Query: 73  QTLLFNSDQ--KIIKLMWDNDF-NISNN-KKLHVLLNTGEYYTYSWIWNINHSKGKSIND 240
           +T  FNS +  K +  M D+DF NI  + ++L +L+N  EY   +    +   K K +  
Sbjct: 130 KTFFFNSAKAYKSLLAMTDDDFANIPRDARELFLLINACEYKRKTVNMKVIVEKLKELVF 189

Query: 241 DAVVVVIDGKKIL 279
           +  VVV  G+K++
Sbjct: 190 EGTVVVRAGRKLV 202


>U00052-2|AAK95881.1|  404|Caenorhabditis elegans Hypothetical
          protein K02F3.6 protein.
          Length = 404

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 79 RFVLNTNDNCQLYKVIIFANHLLCL 5
          +FV +T  NC  YK+I +  + LCL
Sbjct: 19 KFVCHTTCNCPNYKIIGYLLYFLCL 43


>Z78546-3|CAB01768.2|  361|Caenorhabditis elegans Hypothetical
           protein T21H8.2 protein.
          Length = 361

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 32  YYFIQLAIIIGI*NKPYYSIVIRRLLNLCGIMISIFLTTKNCMF 163
           YY I   I+I +    + SI +  L+N   + I+  L T +C F
Sbjct: 54  YYHINAKILIFLNMMSFLSISLATLINYGTLFINALLATDDCDF 97


>AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical
           protein Y110A7A.16 protein.
          Length = 1250

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 21/84 (25%), Positives = 43/84 (51%)
 Frame = +1

Query: 148 KKLHVLLNTGEYYTYSWIWNINHSKGKSINDDAVVVVIDGKKILVSSFKQTVVPPPMSSF 327
           + + VLL +G++++       + S   S N   VVV  D  ++ + S  + VVPPPM  +
Sbjct: 345 QNIEVLLESGQFFSVHITPTASFSDVISQN---VVVATD--ELRMYSLCRRVVPPPMCDY 399

Query: 328 ETELDTYINSVCFAPHNDNIIDTN 399
             +  + I +   + H+ ++I ++
Sbjct: 400 SIQCLSDIVAYTTSTHHVHVITSD 423


>Z98851-5|CAB11541.1|  596|Caenorhabditis elegans Hypothetical
           protein H12I19.5b protein.
          Length = 596

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 74  KPYYSIVIRRLLNLCGIMISIFLTTKNCMFY*ILENIIHIPGFG 205
           K Y  +  R++  +C   I +FLT    + Y  +E+I+  PGFG
Sbjct: 343 KKYLRLPDRQITKIC---IFLFLTNVILLEYPRVEDILTAPGFG 383


>Z98851-4|CAB11542.1|  607|Caenorhabditis elegans Hypothetical
           protein H12I19.5a protein.
          Length = 607

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 74  KPYYSIVIRRLLNLCGIMISIFLTTKNCMFY*ILENIIHIPGFG 205
           K Y  +  R++  +C   I +FLT    + Y  +E+I+  PGFG
Sbjct: 343 KKYLRLPDRQITKIC---IFLFLTNVILLEYPRVEDILTAPGFG 383


>U80437-10|AAN84839.1|  656|Caenorhabditis elegans Hypothetical
           protein C43E11.11 protein.
          Length = 656

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
 Frame = +1

Query: 67  LKQTLLFNSDQKIIKLMWDNDFNISNNKKLHVLLNTGEYYTYSWI-WNINHSKGKSINDD 243
           LK +LL +S  ++ KL+ +NDF+ ++      L+N+     +  + W+   S+  S N +
Sbjct: 321 LKNSLLTHSLARLHKLVEENDFSTAHANAFVDLINSAMEEEHRKVDWDAELSQKMSNNIE 380

Query: 244 AVVVVIDGK 270
             + +I  K
Sbjct: 381 KCIEIIAKK 389


>Z68303-3|CAA92638.1|  248|Caenorhabditis elegans Hypothetical
           protein ZK809.2 protein.
          Length = 248

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 266 PSITTTTASSLIDLPLLWFIFQIQEY 189
           P IT +   S ID PL+W I + +E+
Sbjct: 37  PLITVSNHRSNIDDPLMWCILKFREF 62


>AC024841-2|AAK68540.1|  300|Caenorhabditis elegans Hypothetical
           protein Y59H11AM.2 protein.
          Length = 300

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 16  SDSQKLLLYTTGNYHWYLKQTLLFNSDQKII 108
           S++++  LYT   +  Y+K+  +FN D  +I
Sbjct: 77  SENERFTLYTPEEFSSYVKRLGVFNGDHLVI 107


>AC024841-1|AAK68541.1|  300|Caenorhabditis elegans Hypothetical
           protein Y59H11AM.3 protein.
          Length = 300

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 16  SDSQKLLLYTTGNYHWYLKQTLLFNSDQKII 108
           S++++  LYT   +  Y+K+  +FN D  +I
Sbjct: 77  SENERFTLYTPEEFSSYVKRLGVFNGDHLVI 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.133    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,312,184
Number of Sequences: 27780
Number of extensions: 181910
Number of successful extensions: 467
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)