Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_D15
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    23   1.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   3.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   3.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   5.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   5.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   5.2  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +1

Query: 76  TLLFNSDQKIIKLMWDNDFNISNNKKLHVLLN 171
           TL F S  KIIK +  N +   NN+ + ++ N
Sbjct: 347 TLQFISGIKIIKQISSNIYERQNNEYIWIVSN 378



 Score = 22.2 bits (45), Expect = 2.2
 Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 106 IKLMWDN-DFNISNNKKLHVLLNTGEY 183
           +K  W   D+N  +++K    + +GEY
Sbjct: 34  VKYQWKYFDYNFGSDEKRQAAIQSGEY 60


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 85  IIRFVLNTNDNCQLYKVIIFAN 20
           +  F   T DN  LY ++ F+N
Sbjct: 489 VFAFSRETEDNGSLYAILNFSN 510


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -3

Query: 85  IIRFVLNTNDNCQLYKVIIFAN 20
           +  F   T DN  LY ++ F+N
Sbjct: 489 VFAFSRETEDNGSLYAILNFSN 510


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +3

Query: 132 QYF*QQKTACSIKYWRILYIFLDLEYK 212
           QYF   +  C I+     Y   D+ YK
Sbjct: 143 QYFPMDRQLCHIEIESFGYTMRDIRYK 169


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +3

Query: 132 QYF*QQKTACSIKYWRILYIFLDLEYK 212
           QYF   +  C I+     Y   D+ YK
Sbjct: 143 QYFPMDRQLCHIEIESFGYTMRDIRYK 169


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +3

Query: 132 QYF*QQKTACSIKYWRILYIFLDLEYK 212
           QYF   +  C I+     Y   D+ YK
Sbjct: 82  QYFPMDRQLCHIEIESFGYTMRDIRYK 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.317    0.133    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,817
Number of Sequences: 438
Number of extensions: 2227
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)