Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_D14
         (333 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    27   0.57 
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p...    26   1.3  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    25   3.0  
SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa...    24   5.3  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    24   5.3  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    24   5.3  
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    24   7.0  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    23   9.2  
SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces p...    23   9.2  

>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 27.5 bits (58), Expect = 0.57
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 136 HAKTIDPNSMKVGNDVELTSMGRTYTNKLSEF 231
           H +++D    ++G + ELT +GR ++  L+ F
Sbjct: 216 HGESVDNVRGRIGGNAELTPLGRQFSEDLALF 247


>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 752

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
 Frame = -2

Query: 122 INKQTERQ-KNLNLRHVFCTDTTP--HPLQPPSYLKLPI 15
           I KQ E    N+   H     T P  HPL PP  L LP+
Sbjct: 460 IKKQKEENGDNIEFSHFDPLYTRPSSHPLHPPPILGLPV 498


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 104 RQKNLNLRHVFCTDTTPHPL 45
           RQ+ +NL H++  D+ P PL
Sbjct: 327 RQRPVNLHHLYYPDSLPAPL 346


>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 359

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 89  NLRHVFCTDTTPH 51
           NL H +CT+T P+
Sbjct: 182 NLEHAYCTETRPY 194


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 225 RQFVSIRSPHRCQLYIITHFHRIWINSF 142
           R F       R   ++IT+F+RIW+  F
Sbjct: 497 RAFYKTYYESRSWFHLITNFNRIWVIHF 524


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 169 VGNDVELTSMGRTYTNKLSEFQ 234
           VG DV + S+G    NK  EF+
Sbjct: 609 VGGDVNMYSLGNDNGNKFGEFR 630


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 62  TTPHPLQPPSYLKLPIILPR 3
           TTP PL+  S   LP +LPR
Sbjct: 309 TTPPPLEVISIDHLPTLLPR 328


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 80  HVFCTDTTPHPLQPPSYLKLPIILP 6
           H+F T T P   Q  S    PI++P
Sbjct: 137 HLFHTPTIPRTTQLSSKTSSPIVIP 161


>SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 115

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 13/60 (21%), Positives = 26/60 (43%)
 Frame = -1

Query: 330 NDVRNLYYNGSMIYVK*ILYYNITSCVRGFTRLEFRQFVSIRSPHRCQLYIITHFHRIWI 151
           ND++  YY     Y   I  Y  +  +  + R +  + V   +  +C  ++I  +H + I
Sbjct: 11  NDMKIKYYKRRNCYTLLIFKYKESKKINVYKRKKSDEVVEDCNKLKCTFFMIEEWHLLAI 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,288,298
Number of Sequences: 5004
Number of extensions: 23830
Number of successful extensions: 53
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)