Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_D14
         (333 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344...    30   0.52 
01_01_0391 + 3015864-3016179,3016933-3017756,3017841-3018107,301...    28   2.1  
04_03_0542 + 16940464-16940527,16941906-16942101,16942204-169423...    27   4.9  
04_04_1242 - 32016553-32016857,32017628-32017784,32017871-320180...    26   8.5  
04_04_0828 - 28473753-28474801,28474956-28475096,28475203-28475554     26   8.5  
02_05_1285 - 35452249-35452604,35452702-35452789,35452908-354535...    26   8.5  

>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
            29334956-29335045,29335120-29335155,29335222-29336553,
            29337331-29337497,29337519-29337724,29337815-29338036,
            29338332-29338381,29338754-29338870,29339471-29339551,
            29339656-29339694,29340464-29340636,29340769-29340826,
            29340934-29340987,29341066-29341613,29341695-29341755,
            29342180-29342260,29342448-29342630,29342908-29343162,
            29343304-29343423,29343497-29344901,29344988-29345085,
            29345164-29345218,29345307-29345366,29346498-29346697
          Length = 2077

 Score = 29.9 bits (64), Expect = 0.52
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -2

Query: 209  YVLPIDVNSTSLPTFIEFGSIVFAC*AKQINKQTERQKNLNLRHVFCTDTTPHPLQPP 36
            +  P D + TS  ++  F  +   C  +Q   +TER+   NL+ +      P P  PP
Sbjct: 1876 FAFPSDYSRTSSCSYSSFLEVEHQCGRRQRQSETERESKSNLKDM-AKPKQPPPHAPP 1932


>01_01_0391 +
           3015864-3016179,3016933-3017756,3017841-3018107,
           3018505-3018762,3018950-3018997
          Length = 570

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -1

Query: 228 FRQFVSIRSPHRCQLYIITHF 166
           F QF++IR  H C++Y+I  F
Sbjct: 461 FLQFLTIRLVHACEIYLIPKF 481


>04_03_0542 +
           16940464-16940527,16941906-16942101,16942204-16942365,
           16942721-16942802,16942873-16943139,16943285-16943416
          Length = 300

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -2

Query: 242 LPAWNSDNLLVYVLPIDVNSTSLPTFIEFGSIVF 141
           +P W  +   +  + +  N  +LP FI  GS++F
Sbjct: 133 MPGWIEETRTIDAIFVAYNDQTLPCFIFDGSVIF 166


>04_04_1242 -
           32016553-32016857,32017628-32017784,32017871-32018089,
           32018184-32018470,32018629-32019934,32020021-32020178,
           32020250-32020335,32023106-32023173,32023297-32023340,
           32023418-32023490,32023605-32023684,32023774-32023867,
           32023981-32024151,32024463-32024557,32025049-32025128,
           32025137-32025333,32025896-32026183
          Length = 1235

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 119 NKQTERQKNLNLRHVFCTDTTPHPLQPPSYLKLPII 12
           N+Q E    + L  ++C   TP PL PP +    +I
Sbjct: 438 NQQLEFTSGIPLFSLYCLQLTPSPL-PPKFASKTVI 472


>04_04_0828 - 28473753-28474801,28474956-28475096,28475203-28475554
          Length = 513

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +1

Query: 94  FFCLSVCLLIC 126
           F CL+VCLLIC
Sbjct: 221 FICLAVCLLIC 231


>02_05_1285 -
           35452249-35452604,35452702-35452789,35452908-35453588,
           35453639-35453749,35454012-35454047
          Length = 423

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +1

Query: 73  NTCRRFKFFCLSVC 114
           +TC+R ++ C+SVC
Sbjct: 164 STCKRLQYLCMSVC 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,633,929
Number of Sequences: 37544
Number of extensions: 132258
Number of successful extensions: 266
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)