Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_D14
         (333 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF108843-2|AAD34324.1|  584|Homo sapiens env protein protein.          29   2.6  

>AF108843-2|AAD34324.1|  584|Homo sapiens env protein protein.
          Length = 584

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = -2

Query: 257 AVSAALPAWNSDNLLVYVLPIDVNSTSLPTFIEFGSIVFAC*AKQINKQTERQKNLNLRH 78
           A + A P W   N + +VLPI      +   + FG  +F   ++ I  + +   N ++R 
Sbjct: 506 ASNYAEPPWALSNWMSWVLPIVSPLIPIFLLLLFGPCIFRLVSQFIQNRIQAITNHSIRQ 565

Query: 77  VF-CTDTTPHPL 45
           +F  T    HPL
Sbjct: 566 MFLLTSPQYHPL 577


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,731,326
Number of Sequences: 237096
Number of extensions: 747654
Number of successful extensions: 982
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 76,859,062
effective HSP length: 80
effective length of database: 57,891,382
effective search space used: 1736741460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)