Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_D14
         (333 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81575-7|CAB04638.1|  367|Caenorhabditis elegans Hypothetical pr...    27   4.3  
U41625-5|AAA83327.1|  700|Caenorhabditis elegans Suppressor of a...    26   5.7  
AY091467-1|AAM44123.1|  700|Caenorhabditis elegans SUR-5 protein.      26   5.7  
Z77131-7|CAB00857.2| 1034|Caenorhabditis elegans Hypothetical pr...    26   7.5  
Z46381-11|CAA86520.2| 1034|Caenorhabditis elegans Hypothetical p...    26   7.5  
U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical pr...    26   7.5  

>Z81575-7|CAB04638.1|  367|Caenorhabditis elegans Hypothetical
           protein R08H2.8 protein.
          Length = 367

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +1

Query: 181 VELTSMGRTYTNKLSEFQAGKAADTASNIV 270
           V  +S G T    L E++  K+ DTASNI+
Sbjct: 326 VYYSSYGSTTKGLLMEYEVVKSTDTASNIL 355


>U41625-5|AAA83327.1|  700|Caenorhabditis elegans Suppressor of
           activated let-60ras protein 5 protein.
          Length = 700

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 154 PNSMKVGNDVELTSMGRTYTNKLSEFQAGKAADTASNI 267
           PN +   +D+  TS G+     + +  +GKA   AS+I
Sbjct: 649 PNKIYAVDDIPYTSSGKKVEVAVKQIVSGKAVQKASSI 686


>AY091467-1|AAM44123.1|  700|Caenorhabditis elegans SUR-5 protein.
          Length = 700

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 154 PNSMKVGNDVELTSMGRTYTNKLSEFQAGKAADTASNI 267
           PN +   +D+  TS G+     + +  +GKA   AS+I
Sbjct: 649 PNKIYAVDDIPYTSSGKKVEVAVKQIVSGKAVQKASSI 686


>Z77131-7|CAB00857.2| 1034|Caenorhabditis elegans Hypothetical
           protein M01F1.7 protein.
          Length = 1034

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 71  CTDTTPHPLQPPSYLK 24
           CTDT+P P Q PS ++
Sbjct: 290 CTDTSPIPTQKPSIIR 305


>Z46381-11|CAA86520.2| 1034|Caenorhabditis elegans Hypothetical
           protein M01F1.7 protein.
          Length = 1034

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 71  CTDTTPHPLQPPSYLK 24
           CTDT+P P Q PS ++
Sbjct: 290 CTDTSPIPTQKPSIIR 305


>U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical protein
            F40F4.6 protein.
          Length = 2214

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -2

Query: 227  SDNLLVYVLPIDVNSTSL--PTFIEFGSI 147
            SD  L + +P+D+N+T +   T  EFGS+
Sbjct: 1751 SDGSLPWFVPVDINTTFIYVTTSAEFGSL 1779


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,064,843
Number of Sequences: 27780
Number of extensions: 130205
Number of successful extensions: 282
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 408121444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)