Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_D14
         (333 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   0.97 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   3.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    20   6.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   6.8  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   9.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    20   9.1  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.0 bits (47), Expect = 0.97
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 281 KYYTTILLAVSAALPAWNSDNLLVYVLPIDVNSTSLPTFI 162
           K  TT+ + +SA +  W    +L  V P   N  ++P F+
Sbjct: 369 KASTTLGIIMSAFIVCWLPFFVLALVRPFLKNPDAIPAFL 408


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -2

Query: 116 KQTERQKNLNLRHVFCTDTTPHPLQPP 36
           ++ E + + +++H F T     PL PP
Sbjct: 352 QEEEEEYSPSVQHEFVTFDLDEPLPPP 378


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -1

Query: 183 YIITHFHRIWINSFCVL 133
           YI +HF  ++  +FC++
Sbjct: 113 YIWSHFPYVFGEAFCII 129


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 6.8
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = -2

Query: 173 PTFIEFGSIVFAC*AKQINKQTERQKNLNLRHV 75
           PT    G +     +K+  +QT  + N NL +V
Sbjct: 31  PTLFMIGGVFSNNKSKKYFEQTLNELNFNLNYV 63


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 193 MSTLHHYPLSS 161
           M  LH+YPL S
Sbjct: 162 MMDLHYYPLDS 172


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -3

Query: 271 LQYY*LCPRLYP 236
           ++YY  CP  YP
Sbjct: 190 VEYYSCCPEPYP 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,336
Number of Sequences: 438
Number of extensions: 1630
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)