Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_D13
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein S12|Schizosa...    87   2e-18
SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein S12|Sch...    85   7e-18
SPCC338.13 |cog4||Golgi transport complex subunit Cog4 |Schizosa...    28   1.2  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    27   1.6  
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom...    27   2.7  
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    26   3.6  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   4.8  
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|...    25   6.3  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    25   6.3  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    25   8.3  
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa...    25   8.3  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    25   8.3  

>SPBC1685.02c |rps1202|rps12-2|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 86.6 bits (205), Expect = 2e-18
 Identities = 37/59 (62%), Positives = 46/59 (77%)
 Frame = -2

Query: 283 QALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVL 107
           +ALC E Q PLVKV + K LGEWAGLC +D+DG ARK+VGCSCV + D+GE++ AL  L
Sbjct: 84  EALCAESQTPLVKVADPKILGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSVALQTL 142


>SPCC962.04 |rps1201|rps12-1, rps12|40S ribosomal protein
           S12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 145

 Score = 85.0 bits (201), Expect = 7e-18
 Identities = 35/59 (59%), Positives = 46/59 (77%)
 Frame = -2

Query: 283 QALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVL 107
           +ALC E + PL+KV + K LGEWAGLC +D+DG ARK+VGCSCV + D+GE++ AL  L
Sbjct: 81  EALCAESETPLIKVADPKVLGEWAGLCVLDRDGNARKVVGCSCVAVTDYGEDSAALQKL 139


>SPCC338.13 |cog4||Golgi transport complex subunit Cog4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 738

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = +2

Query: 77  GLT*RLEVVFEYVQRWRLLTEILDNYARATDDFPSL 184
           G++ RLE VF + +  +L+ + +DN+ + T +F +L
Sbjct: 529 GVSSRLEEVFAFAKDQKLVKKSIDNFLQLTVNFENL 564


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 181 PCRLCRFYRDRPIRRASYCYRP 246
           PC LC F R +P+R+  +  RP
Sbjct: 441 PCSLCGFNRTQPLRQFEFRSRP 462


>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 125 RLLTEILDNYARATDDFPSLAVFVD 199
           R+L   L NYA+  DD  SL+ F+D
Sbjct: 84  RILAFALLNYAKNIDDLTSLSAFMD 108


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
 Frame = -3

Query: 363 SKISRRCMSKSNSAIILKDLV-----PNSARGRLSVMNIKSHLLRSITIRSSANGPVSVK 199
           S++    + KS   + L+ L      P   RGR   +N  + L R+ T   SA  P+SVK
Sbjct: 80  SQVKPSALEKSQEVLSLQKLPIKGRRPAGRRGR-PALNTSNSLERNGTRYVSAEAPISVK 138

Query: 198 ST 193
           S+
Sbjct: 139 SS 140


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +1

Query: 355 NLTFVMNSFVEVINNNY*NRAYKLAVICVYRRAS 456
           + TF+ + F   I NNY  R Y LA   V    S
Sbjct: 836 SFTFIYSDFTSNITNNYRPRIYYLAQFSVCENQS 869


>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 201

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 17/78 (21%), Positives = 33/78 (42%)
 Frame = -3

Query: 471 HKSSVTGSPVHTNDC*FXXXXXXXXINYFYKRIHHESKISRRCMSKSNSAIILKDLVPNS 292
           HK+S T +   + +             Y  KR+ H+    RR  + S     L ++VP  
Sbjct: 59  HKNSTTSTVASSGNTTMEKPCVGSEEWYKAKRLSHKEVERRRREAISEGIKELANIVPGC 118

Query: 291 ARGRLSVMNIKSHLLRSI 238
            + + S++   +  +RS+
Sbjct: 119 EKNKGSILQRTAQYIRSL 136


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 233 IVIDLNKWDLMFITESLPRAEFGTRSLSIIAELDFDIH 346
           ++ D   WD +F  ES+P A    +SL+ I    F  H
Sbjct: 299 LIFDSMDWDKLFNAESVPLA---LKSLTFIRNQKFPFH 333


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 375 IHHESKISRRCMSKSNSAIILKDLVPNSARGRLSVMNIKSHL 250
           + +ESK++ RC+ K N  +IL  L  ++     SV  I ++L
Sbjct: 250 LSNESKLAIRCIEK-NLKLILLHLAKSTGASSSSVEKIHAYL 290


>SPBC25B2.04c |||mitochondrial ribosome assembly
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -3

Query: 252 LLRSITIRSSANGPVSVKSTKTARLGKSSVALA*LSRISVRR 127
           L+R++  ++SANG V V        GKSS+ L  L  +++R+
Sbjct: 132 LIRTLVDQASANGRVYVYFVGMPNTGKSSI-LNSLRNVALRK 172


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = +2

Query: 140 ILDNYARATDDFPSLAVFVDFTETGPF--AELLIVIDLNKWDLMFITESLPRAEFGTRSL 313
           I DN    +DDF S AVF  + E   +     +  I  N  DL  + E L  AE     L
Sbjct: 257 INDNSVLRSDDFSSKAVFDKYVERECYYSENAISKIFQNYPDLAVLFEELQYAEGNNDLL 316

Query: 314 SII 322
           S I
Sbjct: 317 SAI 319


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,026,128
Number of Sequences: 5004
Number of extensions: 36452
Number of successful extensions: 84
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)