Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_D13
         (593 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal prote...    81   4e-16
U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical pr...    29   3.3  
U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter...    28   5.8  
L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical pr...    28   5.8  

>U00067-8|AAK20077.1|  140|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 12 protein.
          Length = 140

 Score = 81.4 bits (192), Expect = 4e-16
 Identities = 34/62 (54%), Positives = 45/62 (72%)
 Frame = -2

Query: 283 QALCNEHQIPLVKVDNNKKLGEWAGLCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLK 104
           + LC EHQIPL+KV + K +GE+ GLCK DK+GKARK+VGCS  V+ ++G E     +L 
Sbjct: 74  ETLCAEHQIPLIKVADKKIIGEYCGLCKYDKEGKARKVVGCSSAVVTNWGNEEQGRAILT 133

Query: 103 DY 98
           DY
Sbjct: 134 DY 135


>U88311-6|AAB42347.1|  382|Caenorhabditis elegans Hypothetical
           protein C10H11.8 protein.
          Length = 382

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 271 NEHQIPLVKVDNNKKLGEWAGLCK 200
           N++Q+ +  V+NNKK+ +W G  K
Sbjct: 345 NDNQVKIWDVENNKKVAQWDGHIK 368


>U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 31, isoform a protein.
          Length = 592

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 440 CTGEPVTDDLCSAYVFTSLCA 502
           C+GEPV   +C+    T +CA
Sbjct: 524 CSGEPVETQICNTQACTGMCA 544


>L16559-9|AAA27928.2| 1148|Caenorhabditis elegans Hypothetical
           protein C06E1.10 protein.
          Length = 1148

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 208 LCKIDKDGKARKIVGCSCVVIKDFGEETPALDVLKD 101
           L K  K+ K +K+     + ++DF EETP  +  +D
Sbjct: 488 LVKGTKEWKEKKVEAAKSIKLEDFKEETPETEDFED 523


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,153,863
Number of Sequences: 27780
Number of extensions: 206806
Number of successful extensions: 511
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 511
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)