Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_D12
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    63   2e-11
SPCC1259.09c |||pyruvate dehydrogenase protein x component|Schiz...    41   9e-05
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    34   0.011
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    32   0.043
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    29   0.52 
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    28   0.69 
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom...    27   2.1  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    26   2.8  
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica...    25   6.5  
SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomy...    25   8.5  
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    25   8.5  
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    25   8.5  

>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 63.3 bits (147), Expect = 2e-11
 Identities = 31/72 (43%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
 Frame = +1

Query: 289 YEEQDVMTPSFPDSVSEGDV-KLSKNVGDSVAADEVVLEIETDKTAIPVMAPGHGVIKEL 465
           Y    + TP FP+S++EG + +  K  G+ V  DE +  +ETDK   PV AP  GV+KE 
Sbjct: 40  YASTRIKTPPFPESITEGTLAQWLKQPGEYVNKDEEIASVETDKIDAPVTAPDAGVLKEQ 99

Query: 466 YVKDGDTVKAGQ 501
            VK+GDT+   Q
Sbjct: 100 LVKEGDTITIDQ 111


>SPCC1259.09c |||pyruvate dehydrogenase protein x
           component|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 456

 Score = 41.1 bits (92), Expect = 9e-05
 Identities = 17/64 (26%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
 Frame = +1

Query: 313 PSFPDSVSEGDV-KLSKNVGDSVAADEVVLEIETDKTAIPVMAPGHGVIKELYVKDGDTV 489
           P+   ++ EG++ K     GDS  + +++LE+ETDK  + V    +G++ ++ ++ G  +
Sbjct: 41  PALSPTMEEGNITKWHFKEGDSFKSGDILLEVETDKATMDVEVQDNGILAKVLIEKGSNI 100

Query: 490 KAGQ 501
             G+
Sbjct: 101 PVGK 104


>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 34.3 bits (75), Expect = 0.011
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 313 PSFPDSVSEGDV-KLSKNVGDSVAADEVVLEIETDKTAIPVMAPGHGVIKELYVKDG 480
           P+   +++ G++    K +GD +   +V+ EIETDK  I       G + ++ ++ G
Sbjct: 59  PALSPTMTTGNIGAFQKKIGDKIEPGDVLCEIETDKAQIDFEQQDEGYLAKILIETG 115


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1185

 Score = 32.3 bits (70), Expect = 0.043
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +1

Query: 346  VKLSKNVGDSVAADEVVLEIETDKTAIPVMAPGHGVIKELYVKDGDTVKAG 498
            V++    G  V   +++  +   K  I + AP  GV+K L V  GD+V  G
Sbjct: 1126 VEIRVKEGAKVKKGDIIAVLSAMKMEIVISAPHSGVLKSLAVVQGDSVNGG 1176


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 28.7 bits (61), Expect = 0.52
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = -3

Query: 215 TADWGRAPKTLGTSEDLYRRLCPCLRYIVCKC 120
           T D+ RA K L T EDLY R   C RY+   C
Sbjct: 130 TGDYARA-KCLLTKEDLYNRSSAC-RYLAAFC 159


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +1

Query: 346 VKLSKNVGDSVAADEVVLEIETDKTAIPVMAPGHGVIKELYVKDGDTVKAG 498
           V+     G+ + A E   E+E  K  +P++A   GV+ +L  + G ++ AG
Sbjct: 722 VRFLVETGEHIKAGEAYAEVEVMKMIMPLVATEDGVV-QLIKQPGASLDAG 771


>SPBC1778.02 |rap1||telomere binding protein
           Rap1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 693

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 474 FNVQLLNDSMTRSHNGNRGFVSFNLQDNFIGCDTV 370
           F V+L  D + R+H+G R    F L+D  I  D V
Sbjct: 103 FEVELNQDDVNRTHDGFRKRELFTLEDEKILIDHV 137


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +1

Query: 169 SSEVPKVFGALPQSAVRLNQSRVIVAAHNQVASIHFTNTLYEEQDVMTP 315
           + +VP     +P+S V+ N +R  V +H  VA+   T T +  + V++P
Sbjct: 349 TQQVPFPSTIIPESTVKENSTRPYVNSH-LVANDKITATPFHSEAVVSP 396


>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 666

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +3

Query: 78  QSPVDFQDVTTLLKTLADDISKAGAESSIQVFRGAQSF 191
           + PVD    T LL  + DD+   G +   +VF     +
Sbjct: 416 REPVDIPRNTALLGVMVDDLITKGVKEPYRVFTSRSEY 453


>SPBC28F2.05c |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 276

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -2

Query: 210 RLG*GSKNFGHL*RLVSKTLPLPSIYRLQ 124
           ++G  + N  HL  ++S  LPLP+I +++
Sbjct: 136 KIGVSNYNIHHLEEIISLGLPLPAINQVE 164


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +1

Query: 178 VPKVFGALPQSAVRLNQSRVIVAAHNQVASIHFTN 282
           +PK F A    A++L    V + +   V   HFTN
Sbjct: 35  IPKRFAASTDVAIQLPDRNVTLWSRQAVFGKHFTN 69


>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 246 GDYHPGLVQPNRRLG*GSKNF 184
           GD HPG+ Q N R    S+ F
Sbjct: 151 GDVHPGMPQHNTRFKQSSREF 171


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,975,273
Number of Sequences: 5004
Number of extensions: 37615
Number of successful extensions: 120
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)