Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_D12
(505 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0767 + 19389337-19389381,19390586-19390643,19390720-193907... 60 1e-09
02_03_0404 + 18648632-18648669,18649319-18649379,18649449-186494... 49 2e-06
07_03_0044 - 12758606-12758676,12758765-12758860,12759197-127592... 44 5e-05
02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-28... 44 9e-05
08_02_0759 - 20851828-20851932,20852190-20852285,20853231-208533... 34 0.056
06_03_0163 - 17380601-17380710,17380796-17380856,17381076-173811... 34 0.056
06_01_0037 - 369498-369568,369668-369760,369889-369991,370061-37... 33 0.17
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 31 0.53
05_03_0359 - 12929240-12929376,12931379-12933497,12933594-129337... 30 0.92
10_08_0377 + 17343244-17343372,17344316-17344393,17344496-173445... 29 2.1
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551... 29 2.8
06_03_1309 + 29223197-29223240,29223358-29223592,29223695-292237... 29 2.8
04_04_0190 - 23442824-23442846,23442891-23442949,23443613-234437... 29 2.8
12_02_0340 - 17725866-17725884,17726046-17726326,17726842-177269... 28 3.7
05_04_0015 - 17174653-17175046,17175396-17175439 28 3.7
11_01_0563 + 4423609-4423846,4424671-4426132,4428949-4429364,443... 28 4.9
02_03_0201 + 16302797-16302799,16303949-16304084,16304163-163042... 28 4.9
02_01_0625 + 4690607-4690696,4692673-4692734,4692867-4693230 28 4.9
01_03_0030 - 11787280-11787393,11787487-11787714,11788828-117889... 28 4.9
05_02_0105 + 6644264-6644344,6645573-6646097,6646185-6646410,664... 27 6.5
04_01_0097 - 998766-999383,999479-999861,1000021-1000398,1000486... 27 6.5
07_01_0254 - 1893079-1893181,1893455-1893492,1893586-1893706,189... 27 8.6
02_01_0618 - 4629776-4630037,4630188-4630330,4631200-4631254,463... 27 8.6
>04_03_0767 +
19389337-19389381,19390586-19390643,19390720-19390759,
19390859-19390926,19391007-19391081,19391161-19391216,
19391317-19391361,19391450-19391701,19391787-19391881,
19392395-19392485,19392578-19392688,19392788-19392982,
19393071-19393262
Length = 440
Score = 60.1 bits (139), Expect = 1e-09
Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 3/139 (2%)
Frame = +1
Query: 97 KMLRRCSKHLQTIYRRQGQSLRYKSSEVPKVFGALPQSAVRLNQSRVIV--AAHNQVASI 270
++LRR + L I R R SS++ + QS+ +L + R + A+ Q+ S
Sbjct: 8 RLLRRSNATLGLI--RSYSHARNYSSQLSALIPIGSQSS-KLTRRRYYLPNASPYQLWSR 64
Query: 271 HFTNTLYEEQDVMTPSFPDSVSEGDV-KLSKNVGDSVAADEVVLEIETDKTAIPVMAPGH 447
F + ++ + + P +SV++G + K GD V ADE + +IETDK I V +P
Sbjct: 65 SFASDNGDQVEAVVPFMGESVTDGTLANFLKKPGDRVEADEPIAQIETDKVTIDVASPEA 124
Query: 448 GVIKELYVKDGDTVKAGQK 504
GVI++ +GDTV G K
Sbjct: 125 GVIEKFIASEGDTVTPGTK 143
>02_03_0404 +
18648632-18648669,18649319-18649379,18649449-18649476,
18649787-18649861,18649929-18649984,18650085-18650129,
18650224-18650475,18650586-18650680,18651114-18651204,
18651356-18651466,18651556-18651750,18651827-18652018
Length = 412
Score = 48.8 bits (111), Expect = 2e-06
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Frame = +1
Query: 301 DVMTPSFPDSVSEGDVK-LSKNVGDSVAADEVVLEIETDKTAIPVMAPGHGVIKELYVKD 477
D + P +S+++G + K GD V ADE + +IETDK + V +P G+I++ +
Sbjct: 47 DAVVPFMGESITDGTLATFLKKPGDRVEADEPIAQIETDKVTMDVASPEAGIIEKFVASE 106
Query: 478 GDTVKAGQK 504
G V G K
Sbjct: 107 GGIVTPGVK 115
>07_03_0044 -
12758606-12758676,12758765-12758860,12759197-12759299,
12759379-12759474,12759537-12759603,12759682-12759749,
12759898-12759973,12760112-12760197,12760285-12760361,
12761461-12761533,12761627-12761875,12761997-12762089,
12762218-12762292,12762661-12762716,12763473-12763513,
12763907-12764001,12764085-12764158,12765052-12765145,
12765484-12765519
Length = 541
Score = 44.4 bits (100), Expect = 5e-05
Identities = 38/141 (26%), Positives = 67/141 (47%), Gaps = 5/141 (3%)
Frame = +1
Query: 94 FKMLRRCSKHLQTIYRRQGQSLRYKSSEVPKVFGALPQSAVRLNQSRVIVAAHNQVASIH 273
F ++ K L+T G + Y P F +P + LN S + Q+AS
Sbjct: 54 FPQRKQPGKELETSKLSLGLNGSYTCRRSPNNF--IPNTITGLNGS----LSCGQIASAR 107
Query: 274 -FTNT--LYEEQDVMTPSFPDSVSEGDV-KLSKNVGDSVAADEVVLEIETDKTAIPVMAP 441
F+++ L Q++ PS +++EG++ + K GD V+ EV+ E+ETDK + +
Sbjct: 108 SFSSSADLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECM 167
Query: 442 GHGVIKELYVKDGD-TVKAGQ 501
G + ++ DG +K G+
Sbjct: 168 EEGYLAKIIHGDGSKEIKVGE 188
>02_01_0041 + 279583-281622,281724-282047,282315-282443,282526-282648,
282768-282923,283224-283349,283426-283560,283815-283942,
284037-284148,284233-284547,284655-284771,284871-285166,
285252-285783,287980-288082,288808-288881,288965-289062,
289340-289380,289977-290032,290170-290244,290377-290469,
290602-290850,290930-291002,291681-291766,291853-291938,
292067-292142,292280-292347,292430-292496,292570-292665,
292741-292843,293214-293309,293396-293466
Length = 2047
Score = 43.6 bits (98), Expect = 9e-05
Identities = 35/139 (25%), Positives = 62/139 (44%), Gaps = 3/139 (2%)
Frame = +1
Query: 94 FKMLRRCSKHLQTI-YRRQGQSLRYKSSEVPKVFGALPQSAVRLNQSRVIVAAHNQVASI 270
F ++ K L+T G + RY P +P + LN S + + S
Sbjct: 1556 FPQCKQPGKELETFKVSLGGLNGRYACRRAPN--NCIPTTITGLNGS-LSCGQVSSARSF 1612
Query: 271 HFTNTLYEEQDVMTPSFPDSVSEGDV-KLSKNVGDSVAADEVVLEIETDKTAIPVMAPGH 447
+ L Q++ PS +++EG++ + K GD V+ EV+ E+ETDK + +
Sbjct: 1613 SSSADLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEE 1672
Query: 448 GVIKELYVKDG-DTVKAGQ 501
G + ++ DG +K G+
Sbjct: 1673 GYLAKIIHGDGAKEIKVGE 1691
>08_02_0759 -
20851828-20851932,20852190-20852285,20853231-20853314,
20853411-20853481,20853568-20853655,20853745-20853936,
20854044-20854931
Length = 507
Score = 34.3 bits (75), Expect = 0.056
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 298 QDVMTPSFPDSVSEGD-VKLSKNVGDSVAADEVVLEIETDKTAIPVMAPGHGVIKELYVK 474
+++ P+ +++EG V S GD VA + V+ +E+DK + V G++ + V
Sbjct: 47 REIFMPALSSTMTEGKIVSWSAAEGDRVAKGDAVVVVESDKADMDVETFHDGIVAAVLVP 106
Query: 475 DGDTVKAG 498
G++ G
Sbjct: 107 AGESAPVG 114
>06_03_0163 -
17380601-17380710,17380796-17380856,17381076-17381150,
17381538-17381600,17381679-17381755,17382432-17382515,
17382610-17382654,17382729-17382789,17383658-17384053,
17384220-17384289,17387010-17387083,17387202-17387246,
17387342-17387391,17387846-17387947,17388587-17388620,
17388681-17388758,17388915-17388965,17389082-17389085,
17389182-17389256,17389530-17389624
Length = 549
Score = 34.3 bits (75), Expect = 0.056
Identities = 17/65 (26%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 313 PSFPDSVSEGDV-KLSKNVGDSVAADEVVLEIETDKTAIPVMAPGHGVIKELYVKDGD-T 486
P+ ++++G++ K K G+ + +V+ EIETDK + + G + ++ +G
Sbjct: 157 PALSPTMNQGNIAKWRKQEGEKIEVGDVICEIETDKATLEFESLEEGYLAKILAPEGSKD 216
Query: 487 VKAGQ 501
V+ GQ
Sbjct: 217 VQVGQ 221
>06_01_0037 -
369498-369568,369668-369760,369889-369991,370061-370156,
370227-370293,370379-370446,370606-370681,370890-370975,
371065-371150,371337-371409,371490-371735,371845-371937,
372045-372119,372496-372540,372631-372708,372805-372921,
373865-373894
Length = 500
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 358 KNVGDSVAADEVVLEIETDKTAIPVMAPGHGVIKELYVKDG-DTVKAGQ 501
K GD V+ EV+ E+ETDK + + G + ++ DG +K G+
Sbjct: 98 KKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIIHGDGAKEIKVGE 146
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 31.1 bits (67), Expect = 0.53
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +1
Query: 298 QDVMTPSFPDSVSEGD-VKLSKNVGDSVAADEVVLEIETDKTAIPVMAPGHGVIKELYVK 474
+++ P+ +++EG V + GD VA + V+ +E+DK + V G++ + V
Sbjct: 42 REIFMPALSSTMTEGRIVSWTAAEGDRVAKGDPVVVVESDKADMDVETFYDGIVAVVLVP 101
Query: 475 DGDTVKAG 498
G++ G
Sbjct: 102 AGESAPVG 109
>05_03_0359 - 12929240-12929376,12931379-12933497,12933594-12933773,
12933905-12934118,12934199-12934551,12934642-12934864,
12934953-12935230,12935456-12935725,12935817-12935939,
12936025-12936102,12936351-12936527,12936597-12936686,
12937010-12937120,12937397-12937585,12937667-12937858,
12937990-12938076,12938153-12938257,12938340-12938396,
12938471-12938545,12938647-12938763,12938876-12939000,
12939082-12939121,12939241-12939291,12939382-12939569,
12939808-12939901,12939976-12940149,12940242-12940337,
12940597-12940689,12940794-12940955,12941034-12941240,
12941356-12941728,12942379-12942436,12943096-12943171,
12943874-12943941,12944321-12944642
Length = 2433
Score = 30.3 bits (65), Expect = 0.92
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 367 GDSVAADEVVLEIETDKTAIPVMAPGHGVIKELYVKDGDTVKAG 498
G V AD E+E K +P+++P GVI + + +G ++AG
Sbjct: 880 GAHVDADVPYAEVEVMKMCMPLLSPASGVI-HVVMSEGQAMQAG 922
>10_08_0377 +
17343244-17343372,17344316-17344393,17344496-17344558,
17344836-17344883,17345203-17345349,17346264-17346395,
17346905-17346945,17347605-17347633,17348969-17349096,
17349919-17349994,17350111-17350231,17350300-17350399,
17350491-17350572,17350664-17350746,17351978-17352088,
17352260-17352311,17352363-17352408,17352652-17352860,
17353128-17353251,17353667-17353741,17353837-17353891,
17354476-17354595,17354670-17354762,17354869-17355014,
17355152-17355329,17356876-17357110,17357824-17357912
Length = 929
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = +1
Query: 118 KHLQTIYRRQGQS-LRYKSSEVPKVFGALPQSA 213
+ +QT+Y++ Q+ Y SSEV K+FG+ P A
Sbjct: 660 EEIQTLYQQHNQACFLYLSSEVIKIFGSDPACA 692
>11_01_0676 -
5511755-5511831,5512857-5513052,5513462-5513577,
5513752-5514597,5515515-5515766,5522344-5525206
Length = 1449
Score = 28.7 bits (61), Expect = 2.8
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = +1
Query: 58 QLIQKVNNLQ*IFKMLRRCSKHLQTIYRRQGQSLRYKSSEVPKVFGALPQSAVRLNQSRV 237
+L+ ++NLQ I S + + SLRY S + G +P L+Q +
Sbjct: 174 ELLLHLHNLQVISLEGNSLSGQIPSFLFNNTPSLRYLSFGNNSLSGPIPDGVASLSQLEI 233
Query: 238 IVAAHNQVASI 270
+ +NQ++S+
Sbjct: 234 LDMQYNQLSSL 244
>06_03_1309 +
29223197-29223240,29223358-29223592,29223695-29223783,
29223870-29223968,29224065-29224158,29224297-29224514,
29224861-29224967,29225298-29225472,29225596-29225743,
29226548-29226596,29228016-29228162,29229990-29229996,
29230417-29230482,29230773-29231991,29232073-29233149,
29233226-29233355,29233519-29233617,29233817-29233878,
29234429-29234533
Length = 1389
Score = 28.7 bits (61), Expect = 2.8
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = +1
Query: 268 IHFTNTLYEEQDVMTPSFPDSVSEGDVKLSKNVGDSVAADEVVLEIETDKTAIPVMAPGH 447
+ FTN L + TPSFP S +VK + + G S V + A + PG
Sbjct: 200 MEFTNLLNSARPSQTPSFPTMSSFPEVKNNSSFGASQTNGPPVFSSFSQIGAATNIGPGP 259
Query: 448 G 450
G
Sbjct: 260 G 260
>04_04_0190 -
23442824-23442846,23442891-23442949,23443613-23443737,
23443767-23443901,23444195-23444301,23444488-23444566,
23444856-23444942,23445045-23445281,23445783-23446128,
23446486-23446694
Length = 468
Score = 28.7 bits (61), Expect = 2.8
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 67 QKVNNLQ*IFKMLRRCSKHLQTIYRRQGQSLRYKSSEVPKVFGALPQ-SAVRLN 225
+K+ Q + RC ++ ++R+ + +RYK +P + LP SAV LN
Sbjct: 286 KKMEYTQHVINEALRCGNIVKFVHRKALKDVRYKEYLIPSGWKVLPVFSAVHLN 339
>12_02_0340 -
17725866-17725884,17726046-17726326,17726842-17726928,
17727018-17727113,17728484-17728585,17728720-17728762,
17728834-17728952,17729348-17729444,17730153-17730214,
17730370-17730432,17730847-17730949,17731402-17731497,
17731594-17731742,17732356-17732529,17733078-17733156,
17733807-17733913,17733994-17734062,17734879-17735043,
17735206-17735703
Length = 802
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +1
Query: 313 PSFPDSVSEGDVKLSKNVGDSVAADEVVLEIETD 414
PS PD SEGD S+ DS D+ V+E E D
Sbjct: 71 PSIPDGDSEGDEDDSEVEDDSEEDDKEVVEGEID 104
>05_04_0015 - 17174653-17175046,17175396-17175439
Length = 145
Score = 28.3 bits (60), Expect = 3.7
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +3
Query: 60 THPEGQQSPVDFQDVTTLLKTLADDISKAGAESSIQVFRGAQSFWSPTPICGSVEPVQG 236
T EG +D D L T A D++ A A ++ + +FW P P G PV G
Sbjct: 72 TAAEGSAKTID--DKAVKLGTAAKDVATATATTTEE----KTAFWEPDPDTGYYRPVTG 124
>11_01_0563 +
4423609-4423846,4424671-4426132,4428949-4429364,
4430555-4432052,4432199-4432217,4432469-4432675,
4432814-4433065
Length = 1363
Score = 27.9 bits (59), Expect = 4.9
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +1
Query: 124 LQTIYRRQGQSLRYKSSEVPKVFG-ALPQSAVRLNQSRVIV--AAHNQVASIHFTNTLYE 294
L T Y RY+S + G + S V + V AA NQ A+++ TNT++E
Sbjct: 22 LGTTYSCVAVRRRYRSEAITNDQGNRITPSCVAFTAADRFVGDAAENQ-AALNPTNTIFE 80
Query: 295 EQDVMTPSFPDSVSEGDVKL 354
+ ++ F D + D+KL
Sbjct: 81 VKRLIGRRFSDKSVQEDIKL 100
>02_03_0201 +
16302797-16302799,16303949-16304084,16304163-16304250,
16305531-16305683,16306647-16306809,16306906-16307090,
16307164-16307337,16308055-16308200,16308369-16308492,
16308608-16308788,16309302-16309371,16310155-16310196,
16310276-16310394,16310474-16310672,16311442-16311573,
16312435-16312538,16312641-16312820,16314000-16314090,
16314100-16314139,16314225-16314364,16314500-16314660,
16314897-16315020,16315104-16315255
Length = 968
Score = 27.9 bits (59), Expect = 4.9
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Frame = +1
Query: 187 VFGALPQSAVRLNQSRVIVA---AHNQVASIHFTNTLYEEQDVMTPSFPDSVSEGD 345
+F PQ VRL Q V + A QVASIHF N + + P +SE D
Sbjct: 1 MFQYAPQHLVRLLQIIVDGSCDMAVRQVASIHFKNFVAKNWSPNDPEESQKISESD 56
>02_01_0625 + 4690607-4690696,4692673-4692734,4692867-4693230
Length = 171
Score = 27.9 bits (59), Expect = 4.9
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Frame = +1
Query: 148 GQSLRYKSSEV-PKVFGALPQSAVRLNQSRVIVAAHNQVASIHFTNTLYEEQDVMTPSFP 324
G + R+ S++ PK+ + + R ++ N++ S T T+ E +D S
Sbjct: 17 GAAFRWTPSQLDPKMLSLQNEIFITSGGDRDLI---NRILSKSKTETVPENKDD-GESDD 72
Query: 325 DSVSEGDVKLSKNVGDSVAADEVVLEIE 408
D+ EGD + ++N GD A DE E E
Sbjct: 73 DNDEEGDDEDAENQGDDDAGDEDASEEE 100
>01_03_0030 -
11787280-11787393,11787487-11787714,11788828-11788916,
11789516-11789763,11789858-11790146,11790295-11790454,
11791228-11791404
Length = 434
Score = 27.9 bits (59), Expect = 4.9
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 367 GDSVAADEVVLEIETDKTAIPVMAPGHGVIKELYVKDGDTVK 492
GD V + + E+++DK I + + G + +++ GD VK
Sbjct: 60 GDQVDEFQRLCEVQSDKATIEITSRFKGKVHQIHFGPGDIVK 101
>05_02_0105 +
6644264-6644344,6645573-6646097,6646185-6646410,
6646498-6646875,6647035-6647417,6647513-6648130
Length = 736
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Frame = -2
Query: 324 WETRSHDILFLI*CVSKMN------GRYLIVSGDY--HPGLVQPNRRLG*GSKNF 184
WE +HD L L +S+ N G+Y + Y PG++ P RR+ K F
Sbjct: 253 WEGSAHDSLVLQDALSRPNGLKIPEGKYFLADAGYAARPGILPPYRRVRYHLKEF 307
>04_01_0097 -
998766-999383,999479-999861,1000021-1000398,
1000486-1000711,1000799-1001323,1003032-1003164,
1004353-1004435,1004645-1005349,1005483-1005556,
1006290-1006392,1006485-1006727
Length = 1156
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Frame = -2
Query: 324 WETRSHDILFLI*CVSKMN------GRYLIVSGDY--HPGLVQPNRRLG*GSKNF 184
WE +HD L L +S+ N G+Y + Y PG++ P RR+ K F
Sbjct: 673 WEGSAHDSLVLQDALSRPNGLKIPEGKYFLADAGYAARPGILPPYRRVRYHLKEF 727
>07_01_0254 -
1893079-1893181,1893455-1893492,1893586-1893706,
1893800-1893869,1894231-1894401,1894485-1894659,
1894746-1894933,1895023-1895166,1895316-1895379,
1895464-1895556,1895649-1895734,1896434-1896574,
1896658-1896804,1896970-1897057,1898080-1898235,
1898428-1898577
Length = 644
Score = 27.1 bits (57), Expect = 8.6
Identities = 20/55 (36%), Positives = 28/55 (50%)
Frame = +1
Query: 193 GALPQSAVRLNQSRVIVAAHNQVASIHFTNTLYEEQDVMTPSFPDSVSEGDVKLS 357
G+LP S +RLN RV+ N A TL E ++T ++ S DVK+S
Sbjct: 504 GSLPTSKIRLNMQRVM---QNNAAVFRTQETLEEGCKLITKAWE---SYHDVKIS 552
>02_01_0618 -
4629776-4630037,4630188-4630330,4631200-4631254,
4631539-4631603,4631714-4631857,4632141-4632194,
4632363-4632410,4632466-4632541,4632624-4632722,
4633000-4633097,4633615-4633719,4633816-4633924,
4634137-4634252,4634332-4634496
Length = 512
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 223 STEPQIGVGLQKLWAPLKTCIEDSAPAFDI 134
+TE +G+ +QKL A L C+E++ DI
Sbjct: 310 ATEKAVGIKVQKLQAKLDKCMEETGFLNDI 339
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,683,851
Number of Sequences: 37544
Number of extensions: 244571
Number of successful extensions: 695
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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