Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_D11
(537 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regula... 109 3e-25
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 30 0.19
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 30 0.19
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 28 1.0
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 27 1.3
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 26 3.1
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch... 26 4.1
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 25 5.4
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 5.4
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 5.4
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 25 5.4
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 25 7.2
SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr 1|... 25 9.5
SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces pomb... 25 9.5
>SPCC188.11 |prp45|cwf13, snw1, SPCC584.08|transcriptional regulator
Prp45|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 109 bits (262), Expect = 3e-25
Identities = 65/172 (37%), Positives = 101/172 (58%), Gaps = 8/172 (4%)
Frame = +2
Query: 11 ERHKERQRDRNLSRAAPDKRSKLV-KDRERDISEQIALGMPAKSAQGAEAMFDQRLFNNT 187
ER ++ ++D LSR +KR+KL KDR RD++E++ALG+ +K + ++ M D RLFN
Sbjct: 397 ERRRQAEKDLRLSRMGAEKRAKLAEKDRPRDVAERVALGL-SKPSMSSDTMIDSRLFNQA 455
Query: 188 KGMDSGYGDDEAYNVYDKPWRNQDNIGTHIYRP--TRNADKDNYSDIDAIANTRRF---- 349
G+ SG+ D+++YNVYDKPWR + + +YRP T + D ++++ I + R+
Sbjct: 456 SGLGSGFQDEDSYNVYDKPWRAAPS--STLYRPGATLSRQVDASAELERITSESRYDVLG 513
Query: 350 VADKEFAGTSS-TNARSGPVQFEKDAPNREEPSRSGQADADFDPFGLDRFLS 502
A K+F G+ +R+GPV FEKD DPFG+D FL+
Sbjct: 514 NAHKKFKGSDEVVESRAGPVTFEKDIA---------------DPFGVDTFLN 550
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 30.3 bits (65), Expect = 0.19
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +2
Query: 179 NNTKGMDSGYGDDEAY-NVYDKPWRNQD-NIGTHIYRPTRNADKDNYSDIDAIANTRRFV 352
+N+ D+ DD+AY NV + D +I TH P N K + S DA++ + V
Sbjct: 192 SNSNSSDTST-DDQAYLNVSVSENEHADRSIKTHSSAPPLNQQKSSTSVNDAVSKAIQLV 250
Query: 353 ADKEFAGTSSTNARS 397
G+ STN S
Sbjct: 251 KSTSDLGSLSTNTSS 265
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 30.3 bits (65), Expect = 0.19
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Frame = -3
Query: 469 VRVRLTAPGRFFT----IRRVLLKLDRSR-TSVGTTRPSEFFVSDKPSSISNGVDITVVI 305
V V APG+ F+ I R ++ R TS G S +DKP + V
Sbjct: 433 VAVLQRAPGQVFSGTLGILRPSSAANKERQTSSGNQGSSNNSGNDKPKIVWFKPSDKRVP 492
Query: 304 LIGVP--RRPVD-VGSDVVLITPRFVIHVVRFVITVTAVHPFGVI 179
LI +P + P D +G+D F+ + R+ VT++HPFG++
Sbjct: 493 LIAIPTEQAPTDFLGNDQAYAQRLFLASIKRW--PVTSLHPFGML 535
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 27.9 bits (59), Expect = 1.0
Identities = 13/51 (25%), Positives = 20/51 (39%)
Frame = +2
Query: 227 NVYDKPWRNQDNIGTHIYRPTRNADKDNYSDIDAIANTRRFVADKEFAGTS 379
N+Y K W + D +G + PTR + + I F A G +
Sbjct: 100 NLYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNN 150
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 27.5 bits (58), Expect = 1.3
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = +2
Query: 17 HKERQRDRNLSRAAPDKRSKLVKDRE-RDISEQIALGMPAKSAQGAEAMFDQRLFNNTKG 193
H +R+ + + + V +R+ R + +IAL + + AQ + F +RL +N
Sbjct: 49 HLDRELHDLKQQISSQSKQNFVLERDVRYLDSKIALLIQNRMAQEEQHEFAKRLNDNYNA 108
Query: 194 MDSGYGDDEAYNVY 235
+ + DD +Y
Sbjct: 109 VKGSFPDDRKLQLY 122
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 26.2 bits (55), Expect = 3.1
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = -1
Query: 537 RLRADLSARFASLRNRSRPNGSKSASA*PLREGSSRFGASFSNWTGP 397
R+R F S N+ RP ++ P R+ S+ F+ GP
Sbjct: 50 RMRQGFEKSFPSSPNKKRPRTNEGDRFIPSRDASTELWTGFTKVEGP 96
>SPAC1486.06 |||nicotinate phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 410
Score = 25.8 bits (54), Expect = 4.1
Identities = 11/49 (22%), Positives = 23/49 (46%)
Frame = -3
Query: 403 RSRTSVGTTRPSEFFVSDKPSSISNGVDITVVILIGVPRRPVDVGSDVV 257
+S +GT S+F PS +S ++I + + + V + D++
Sbjct: 341 KSAFGIGTNLTSDFQKVSNPSEVSKPMNIVIKLFSAEGTKAVKISDDIM 389
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +2
Query: 5 EAERHKERQRDRNLSRAAPDKRSKLVKDRERDISEQIALGMPAKS 139
E+E + + +AP K++++ K R +D SEQ P K+
Sbjct: 159 ESESEDNSASEEDELDSAPAKKAQVKKKRTKDESEQEEAASPKKN 203
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +2
Query: 407 QFEKDAPNREEPSRSGQADADFDPFGLDRFLSEAKRADK 523
+ + +APNR + R+G D D D F E ++ +K
Sbjct: 152 EVDDEAPNRTQGHRAGVIDEFADFIEQDEFEDEERQEEK 190
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 5 EAERHKERQR-DRNLSRAAPDKRSKLVKDRERDISEQIALGM 127
+ +R KE ++ RNLS + K S K + IS +ALGM
Sbjct: 365 QTKREKEEKKIRRNLSLSGSSKYSVNSKAKMMSISTPMALGM 406
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -1
Query: 522 LSARFASLRNRSRPNGSKSASA*PLREGSSRFGASFSNWT 403
+SA +S+ S + SKS+S+ R GSS +S S T
Sbjct: 515 MSASLSSVHTSSATSSSKSSSSSSSRSGSSSSSSSRSGST 554
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -1
Query: 438 SSRFGASFSNWTGPERALVLLVPANSLSATNR 343
+S FG F ++ P R+ +P SLS+T R
Sbjct: 433 TSEFGELFVDFRRPARSYPAHIPLMSLSSTKR 464
>SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +2
Query: 131 AKSAQGAEAMFDQRLFNNTKGMDSGYGDDEAYNVYDKPW 247
A + + +F+Q F N + SG+ +D ++Y PW
Sbjct: 30 ASGSPRRKQLFEQMGFPNVETCVSGFPEDLNKSMYITPW 68
>SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 118
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +2
Query: 5 EAERHKERQRDRNLSRAAPDKRSKLVKDR 91
EA++H E +++ L + A ++R K KDR
Sbjct: 67 EAQKHFESVQEQRLLQKAKNERLKTHKDR 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,035,826
Number of Sequences: 5004
Number of extensions: 41430
Number of successful extensions: 171
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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