Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_D11
         (537 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    30   0.017
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    30   0.017
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    24   0.86 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      23   2.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   3.5  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.6  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.0  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 29.9 bits (64), Expect = 0.017
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 344  RFVADKEFAGTSSTNARSGPVQFEKDAPNREEPSRS 451
            R V+D  + GTSST++   P+  +K  P R   SRS
Sbjct: 1812 RAVSDFIYHGTSSTSSDISPMSEQKSLPRRGRSSRS 1847


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 29.9 bits (64), Expect = 0.017
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = +2

Query: 344  RFVADKEFAGTSSTNARSGPVQFEKDAPNREEPSRS 451
            R V+D  + GTSST++   P+  +K  P R   SRS
Sbjct: 1808 RAVSDFIYHGTSSTSSDISPMSEQKSLPRRGRSSRS 1843


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 490 IQTERVEVRVRLTAPGRFF-TIRRVLLKLDRSRTSVGTTRPS 368
           I++   ++ V LT PGRFF  +R +    D +  + G   PS
Sbjct: 118 IESTSNKMTVILTPPGRFFCEVRPIKRVKDSTNCNCGWKNPS 159


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 12/53 (22%), Positives = 24/53 (45%)
 Frame = +2

Query: 161 FDQRLFNNTKGMDSGYGDDEAYNVYDKPWRNQDNIGTHIYRPTRNADKDNYSD 319
           +D+RL +N+    S +  D+  N+Y  P     + G     P ++    ++ D
Sbjct: 116 YDRRLHDNSPSFLSDHSRDQEQNLYLTPSPQMYSSGGEEITPRQSHQSYHHMD 168


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 143 QGAEAMFDQRLFNNTKGMDSGYGDDEAYNVYDKP 244
           +G +   D+R +  + G DSG  +D A ++   P
Sbjct: 691 EGDDDQVDEREYPESHGHDSGQDEDMAEDLSMAP 724


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = -2

Query: 317 HCSYPYR--RSSSAGRCGFRCCPDYATVCHTRCTLRHHRNRCPSL 189
           H S P +  RSSSA       C  +   C T    + H ++CP L
Sbjct: 275 HGSPPVKQHRSSSASTT----CSGHTVRCFTGGPRKSHESQCPML 315


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 424  RVLLKLDRSRTSVGTTRPSEFFVSDKPSSIS 332
            +VLL  D+ +   GTT   E FV+ +   +S
Sbjct: 1509 KVLLGSDKIKFVPGTTSQPEVFVNGEKIVVS 1539


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,026
Number of Sequences: 438
Number of extensions: 3491
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)