Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_D10
         (307 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyc...    24   4.4  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    24   5.8  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    24   5.8  

>SPBC106.07c |||N alpha-acetyltransferase Nat2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 167

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +3

Query: 150 GWPV*DIY-AILILDN*NEYI*VHYMSIDHVQYLFRNLINTYERY 281
           GW    +Y  I +LD    ++ V  +  + + YL  +++N+  RY
Sbjct: 62  GWWSLGVYIGISVLDFSASFVLVRTLGAERIGYLEHSILNSIRRY 106


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 47  RLK*YNNIFLILFILNRFC 103
           RL  + N FLI FI+ R C
Sbjct: 5   RLSAFGNAFLIYFIIFRLC 23


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 86  ILNRFCIRTDSGYYMYVLIKSGVACI 163
           +LN+    T SGY     +K G+AC+
Sbjct: 367 LLNQLLKGTPSGYQYEEELKQGMACV 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,094,455
Number of Sequences: 5004
Number of extensions: 18824
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)