Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_D09
         (582 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            24   3.1  
CR954256-2|CAJ14143.1|  295|Anopheles gambiae cyclin protein.          23   7.2  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            23   7.2  
EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calc...    23   9.5  

>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 25/95 (26%), Positives = 36/95 (37%), Gaps = 3/95 (3%)
 Frame = -1

Query: 414 MKNCEPLVLGPALAIESTPGPVCFRTKFSSPNFSP*MDFPPVPLW--FVKSPPCSMKLGM 241
           MKNC+   + P      +  PV      SSP  SP +   P P     +   P S  L  
Sbjct: 343 MKNCKSCSISPVSDRSESVSPVPSLPVRSSPEPSPVLLRSPTPAKKPLISVAPASKLLSK 402

Query: 240 T-RWKVEPL*PKPFSPVQRARKFSQVLGVTSVLSS 139
           + +    P  P P S  +R        G+ + +SS
Sbjct: 403 SLQPSTLPTRPSPKSSRKRRTGHRPPAGMNASMSS 437


>CR954256-2|CAJ14143.1|  295|Anopheles gambiae cyclin protein.
          Length = 295

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 214 LQRLHFPPCHPQLHAA 261
           +  LH PP HP  H A
Sbjct: 220 ISSLHAPPSHPGAHRA 235


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 431  SWLDGRHVVFGNVVEGMDVVKQVELYGSQAGKTTKKI 541
            SWL   HV    V E   +V+    +GS + +TTK +
Sbjct: 3198 SWLLLAHVAPAAVREVKRIVQNFFGWGSSSSRTTKDL 3234


>EF595743-1|ABQ88369.1| 1893|Anopheles gambiae voltage-gated calcium
           channel alpha1 subunit protein.
          Length = 1893

 Score = 22.6 bits (46), Expect = 9.5
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 165 RPVKTSELSVLARRASATKAPLSTVSSPTSCCRV 266
           RP + SELSV   +    K+    + SPT+  R+
Sbjct: 814 RPRRLSELSVKKSKKPIPKSNALLIFSPTNRFRI 847


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 636,901
Number of Sequences: 2352
Number of extensions: 13744
Number of successful extensions: 22
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 55506924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)