Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_D08
         (104 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0104 - 12907816-12908301                                         26   3.6  
03_02_0102 + 5637469-5639064                                           26   3.6  
08_02_0154 - 13324384-13325351,13326306-13326502,13326695-133272...    26   4.7  
08_02_0146 - 13195691-13196658,13197613-13197809,13198002-131984...    26   4.7  
04_01_0296 + 3927741-3927960,3928257-3928900                           25   8.2  
02_05_0225 + 26951993-26952165,26953169-26953567,26953644-269537...    25   8.2  

>10_07_0104 - 12907816-12908301
          Length = 161

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 75  FLVYNGTVRMNAMRRSLSSCRIPAA 1
           F+  +G  R    RRS S CR PAA
Sbjct: 112 FVFTDGRTRAARWRRSASGCRCPAA 136


>03_02_0102 + 5637469-5639064
          Length = 531

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 3   LQEFGTRKDCVASRSSVPCHCK 68
           ++E G   D V   S + CHCK
Sbjct: 242 MRELGVEPDLVTYNSLIDCHCK 263


>08_02_0154 -
           13324384-13325351,13326306-13326502,13326695-13327274,
           13328324-13328446,13328803-13329130
          Length = 731

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 18  TRKDCVASRSSVPCHCKREI 77
           TR +   S SS PC C R++
Sbjct: 635 TRNELECSSSSTPCRCMRQV 654


>08_02_0146 -
           13195691-13196658,13197613-13197809,13198002-13198479,
           13199660-13199782,13200139-13200466
          Length = 697

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 18  TRKDCVASRSSVPCHCKREI 77
           TR +   S SS PC C R++
Sbjct: 601 TRNELECSSSSTPCRCMRQV 620


>04_01_0296 + 3927741-3927960,3928257-3928900
          Length = 287

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 21  RKDCVASRSSVPCHCKREI 77
           RK+   S SS PC C R++
Sbjct: 215 RKEREGSSSSTPCRCMRQV 233


>02_05_0225 + 26951993-26952165,26953169-26953567,26953644-26953797,
            26954069-26954240,26954494-26954567,26954667-26954763,
            26954888-26955000,26955168-26955283,26955960-26956017,
            26956512-26956664,26957377-26957460,26957579-26957734,
            26958401-26958469,26959212-26959300,26959398-26959560,
            26959740-26959874,26959950-26960055,26960143-26960237,
            26960508-26960753,26961567-26961635,26961772-26961837,
            26961838-26961983,26962348-26962449,26962752-26962899,
            26964183-26964239,26964315-26964445,26964535-26964623,
            26964694-26965007,26965084-26965176,26966504-26966578,
            26966834-26966895,26967254-26967356,26967518-26967676,
            26967790-26967930,26967981-26968084,26968146-26968260,
            26969017-26969169,26969256-26969417
          Length = 1646

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -2

Query: 88   LFQVISRLQWHGTDERDATQSF 23
            ++++I  ++W G D  D T  F
Sbjct: 959  IYEIIEEIEWTGVDPDDLTSKF 980


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,729,522
Number of Sequences: 37544
Number of extensions: 24124
Number of successful extensions: 98
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 98
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 14,793,348
effective HSP length: 16
effective length of database: 14,192,644
effective search space used: 255467592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)