Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_D08
(104 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U80845-1|AAK39181.1| 1217|Caenorhabditis elegans Prion-like-(q/n... 28 0.77
Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical pr... 25 5.4
L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membra... 25 5.4
Z83109-4|CAB05519.1| 705|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z82083-4|CAB04972.1| 371|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z81063-2|CAB02959.1| 823|Caenorhabditis elegans Hypothetical pr... 25 7.1
>U80845-1|AAK39181.1| 1217|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 15
protein.
Length = 1217
Score = 28.3 bits (60), Expect = 0.77
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 100 NGTCLFQVISRLQWHGTDERDATQSFLVPNS 8
NG+C +++S + W+ D R+ + LV NS
Sbjct: 114 NGSCQHKIVSAVSWNNLDSRNWPVNKLVINS 144
>Z93395-7|CAH04744.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 25.4 bits (53), Expect = 5.4
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +3
Query: 15 GTRKDCVASRSSVPCHC 65
GT DC + PCHC
Sbjct: 997 GTPNDCQPEATRAPCHC 1013
>Z93395-6|CAB07708.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 25.4 bits (53), Expect = 5.4
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +3
Query: 15 GTRKDCVASRSSVPCHC 65
GT DC + PCHC
Sbjct: 997 GTPNDCQPEATRAPCHC 1013
>Z93395-4|CAB07707.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 25.4 bits (53), Expect = 5.4
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +3
Query: 15 GTRKDCVASRSSVPCHC 65
GT DC + PCHC
Sbjct: 997 GTPNDCQPEATRAPCHC 1013
>Z93395-3|CAB07706.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 25.4 bits (53), Expect = 5.4
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +3
Query: 15 GTRKDCVASRSSVPCHC 65
GT DC + PCHC
Sbjct: 997 GTPNDCQPEATRAPCHC 1013
>Z93395-1|CAB07704.1| 1160|Caenorhabditis elegans Hypothetical protein
ZC101.2b protein.
Length = 1160
Score = 25.4 bits (53), Expect = 5.4
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +3
Query: 15 GTRKDCVASRSSVPCHC 65
GT DC + PCHC
Sbjct: 997 GTPNDCQPEATRAPCHC 1013
>Z93375-9|CAH04704.1| 2389|Caenorhabditis elegans Hypothetical protein
ZC101.2f protein.
Length = 2389
Score = 25.4 bits (53), Expect = 5.4
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +3
Query: 15 GTRKDCVASRSSVPCHC 65
GT DC + PCHC
Sbjct: 997 GTPNDCQPEATRAPCHC 1013
>Z93375-8|CAB07569.1| 3375|Caenorhabditis elegans Hypothetical protein
ZC101.2e protein.
Length = 3375
Score = 25.4 bits (53), Expect = 5.4
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +3
Query: 15 GTRKDCVASRSSVPCHC 65
GT DC + PCHC
Sbjct: 997 GTPNDCQPEATRAPCHC 1013
>Z93375-7|CAB07568.1| 2295|Caenorhabditis elegans Hypothetical protein
ZC101.2c protein.
Length = 2295
Score = 25.4 bits (53), Expect = 5.4
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +3
Query: 15 GTRKDCVASRSSVPCHC 65
GT DC + PCHC
Sbjct: 997 GTPNDCQPEATRAPCHC 1013
>Z93375-6|CAB07567.1| 2482|Caenorhabditis elegans Hypothetical protein
ZC101.2a protein.
Length = 2482
Score = 25.4 bits (53), Expect = 5.4
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +3
Query: 15 GTRKDCVASRSSVPCHC 65
GT DC + PCHC
Sbjct: 997 GTPNDCQPEATRAPCHC 1013
>L13458-1|AAA28156.1| 2481|Caenorhabditis elegans basement membrane
proteoglycan protein.
Length = 2481
Score = 25.4 bits (53), Expect = 5.4
Identities = 8/17 (47%), Positives = 9/17 (52%)
Frame = +3
Query: 15 GTRKDCVASRSSVPCHC 65
GT DC + PCHC
Sbjct: 996 GTPNDCQPEATRAPCHC 1012
>Z83109-4|CAB05519.1| 705|Caenorhabditis elegans Hypothetical
protein F44G3.7 protein.
Length = 705
Score = 25.0 bits (52), Expect = 7.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = -1
Query: 83 SSNFSFTMARYG*TRCDAV 27
S NF F A+YG ++C+A+
Sbjct: 393 SENFQFFCAKYGYSKCNAL 411
>Z82083-4|CAB04972.1| 371|Caenorhabditis elegans Hypothetical
protein ZK1010.6 protein.
Length = 371
Score = 25.0 bits (52), Expect = 7.1
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +1
Query: 1 CCRNSARGKTASHRVHPY 54
CC + G T + R+ PY
Sbjct: 108 CCSDKVHGSTVARRIRPY 125
>Z81063-2|CAB02959.1| 823|Caenorhabditis elegans Hypothetical
protein F15D3.4 protein.
Length = 823
Score = 25.0 bits (52), Expect = 7.1
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1
Query: 86 ISSNFSFTMARYG*TRCDAVFPRAEF 9
+ NF+F +YG ++C F A+F
Sbjct: 552 LMDNFNFVNEQYGASKCVGYFAHADF 577
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,372,621
Number of Sequences: 27780
Number of extensions: 21461
Number of successful extensions: 60
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60
length of database: 12,740,198
effective HSP length: 16
effective length of database: 12,295,718
effective search space used: 221322924
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -