Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_D08
         (104 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    19   4.3  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    19   4.3  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    19   4.3  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    19   4.3  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    19   5.6  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    19   7.4  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    18   9.8  
AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding prote...    18   9.8  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 99  MVRVYFK*FLVYNGTVRMNAMRRSLSSCR 13
           ++ V+F   +  NGTV     R  + SC+
Sbjct: 159 LIPVHFALRIYRNGTVNYLMRRHLILSCQ 187


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 99  MVRVYFK*FLVYNGTVRMNAMRRSLSSCR 13
           ++ V+F   +  NGTV     R  + SC+
Sbjct: 159 LIPVHFALRIYRNGTVNYLMRRHLILSCQ 187


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 99  MVRVYFK*FLVYNGTVRMNAMRRSLSSCR 13
           ++ V+F   +  NGTV     R  + SC+
Sbjct: 210 LIPVHFALRIYRNGTVNYLMRRHLILSCQ 238


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 99  MVRVYFK*FLVYNGTVRMNAMRRSLSSCR 13
           ++ V+F   +  NGTV     R  + SC+
Sbjct: 159 LIPVHFALRIYRNGTVNYLMRRHLILSCQ 187


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/32 (21%), Positives = 14/32 (43%)
 Frame = -1

Query: 104 IKWYVFISSNFSFTMARYG*TRCDAVFPRAEF 9
           ++W+     +    M     T C A++ R E+
Sbjct: 29  LRWFEIWRDSLPTKMRELNATACAALYERVEW 60


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 5/12 (41%), Positives = 9/12 (75%)
 Frame = +3

Query: 42  RSSVPCHCKREI 77
           +++ P HCK E+
Sbjct: 344 KNNCPLHCKPEL 355


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 75  FLVYNGTV 52
           +L YNGTV
Sbjct: 363 YLTYNGTV 370


>AF393497-1|AAL60422.1|  143|Apis mellifera odorant binding protein
           ASP5 protein.
          Length = 143

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 7/18 (38%), Positives = 9/18 (50%)
 Frame = +3

Query: 18  TRKDCVASRSSVPCHCKR 71
           T  DC  +   V CH K+
Sbjct: 118 TGDDCQKTYQYVQCHYKQ 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,826
Number of Sequences: 438
Number of extensions: 338
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 15
effective length of database: 139,773
effective search space used:  2655687
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)