Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_D07
(395 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 40 2e-04
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 38 6e-04
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 38 6e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 35 0.004
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 35 0.005
SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 35 0.005
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 33 0.016
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 33 0.016
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 33 0.021
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 33 0.021
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 32 0.028
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.065
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 31 0.065
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 30 0.11
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 30 0.15
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 29 0.20
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 29 0.26
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 28 0.46
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 28 0.46
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 27 1.1
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 1.1
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 27 1.1
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 1.4
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 27 1.4
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 26 1.8
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 2.4
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 25 4.3
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 5.6
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 25 5.6
SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyc... 25 5.6
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc... 25 5.6
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 24 7.4
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 24 9.8
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 24 9.8
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 39.5 bits (88), Expect = 2e-04
Identities = 19/55 (34%), Positives = 31/55 (56%)
Frame = +3
Query: 183 LDLPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFG 347
LD P ++ + +YIGNL D+ ED+I +FS +GE ++ L ++K G
Sbjct: 15 LDKPFSSSWHQDYSDSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETG 69
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 37.9 bits (84), Expect = 6e-04
Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +3
Query: 213 VKFNGRSR-LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFI 353
V+ +G R +++GNL N +TEDEI+ P+G ++ + E+N F+
Sbjct: 199 VQQSGACRNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERNIAFV 246
Score = 30.7 bits (66), Expect = 0.086
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 225 GRSR-LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAERA 386
G SR +YIGN + +T + ++ F +GE + +EKN F+ +A A
Sbjct: 411 GASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKNCAFVNFTSLASAINA 465
Score = 27.1 bits (57), Expect = 1.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 192 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQN 287
P + + ++ G +YIGN+ D T +EI N
Sbjct: 310 PVLQKPDLIMTGNRTVYIGNIHADTTIEEICN 341
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 37.9 bits (84), Expect = 6e-04
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +3
Query: 231 SRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKN-----FGFIKLDYRVNAERAKRE 395
+ +YI NL ++TE E +LF +GE L L K++N FGF+ A++A E
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDE 320
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 35.1 bits (77), Expect = 0.004
Identities = 17/52 (32%), Positives = 31/52 (59%)
Frame = +3
Query: 231 SRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAERA 386
S +++G L+ V+E+E++ LF +GE + + K GF++ R +AE A
Sbjct: 303 STVFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIA 354
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 34.7 bits (76), Expect = 0.005
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Frame = +3
Query: 234 RLYIGNLTNDVTEDEIQNLFSPYG--ESAELFLNKEKN--FGFIKLDYRVNAERAKR 392
RL++ NLT ED++++LF P+G E + ++K+ N GF +D+ +A+ A R
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFH-DADDAVR 379
Score = 25.0 bits (52), Expect = 4.3
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYGESAELFL 326
L + N + +E+ +LFSP+GE + +
Sbjct: 508 LLVKNFPYGTSAEELTSLFSPFGELGRILI 537
>SPBC428.12c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 116
Score = 34.7 bits (76), Expect = 0.005
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 5/58 (8%)
Frame = +3
Query: 228 RSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNK-----EKNFGFIKLDYRVNAERA 386
++ +++GNL VTE + N F P+GE + L++ ++++ F++ D +A+ A
Sbjct: 5 KATVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVDRSYAFVEFDEPEDAKEA 62
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 33.1 bits (72), Expect = 0.016
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +3
Query: 204 QSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYG--ESAEL--FLNKEKNFGFIKLDYRV 371
+S + GR LY+ N+ V E +++ F YG ES + N+ K FG++ +
Sbjct: 749 RSGAVYEGRE-LYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFNQHKGFGYVVMTTNQ 807
Query: 372 NAERA 386
+AE A
Sbjct: 808 DAENA 812
Score = 29.5 bits (63), Expect = 0.20
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Frame = +3
Query: 108 QDNMKPIQREEMMLANKLKDLTGPLLDLPAIDQSE--VKFNGRSRLYIGNLTNDVTEDEI 281
+DN K ++ ++ + + L DL +I E V+ + + LY+ N E +I
Sbjct: 623 EDNQKDVKVAQIEFSETSEVLAAKTRDLKSIRGHEISVQIHVDTNLYVTNFPPTYDELDI 682
Query: 282 QNLFSPYGESAEL 320
LFS YG ++
Sbjct: 683 TKLFSAYGNVVDV 695
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 33.1 bits (72), Expect = 0.016
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAERA 386
+++G L ++++E ++Q F P+G + + K GF++ + AE+A
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGKGCGFVQYSEKSAAEKA 348
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 32.7 bits (71), Expect = 0.021
Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 6/47 (12%)
Frame = +3
Query: 231 SRLYIGNLTNDVTEDEIQNLFSPYGE--SAELFLNKE----KNFGFI 353
+++++G + D TE+E +N F+ +G A L ++K+ + FGF+
Sbjct: 247 AKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFV 293
Score = 27.1 bits (57), Expect = 1.1
Identities = 9/38 (23%), Positives = 22/38 (57%)
Frame = +3
Query: 234 RLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFG 347
+++IG L + T+D +++ F +GE + + ++ G
Sbjct: 164 KMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTG 201
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 32.7 bits (71), Expect = 0.021
Identities = 14/66 (21%), Positives = 32/66 (48%)
Frame = +3
Query: 189 LPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYR 368
LP + + + +Y ++++ +T +E++ + YGE + K ++ GF+
Sbjct: 486 LPRVLEDSILMGASRNVYFSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTNI 545
Query: 369 VNAERA 386
NA +A
Sbjct: 546 SNAMKA 551
Score = 31.1 bits (67), Expect = 0.065
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +3
Query: 189 LPAIDQSEVKFNGRSR-LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFI 353
LP Q+ SR ++IGNL + E EI+ F +G+ + + +KN F+
Sbjct: 284 LPESIQNFCSNTAASRNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKNIAFV 339
Score = 24.2 bits (50), Expect = 7.4
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = +3
Query: 204 QSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFI 353
Q E K NG +++GNL EI +L +G + EK+ F+
Sbjct: 400 QQESKDNGNRTVFLGNLHTKTKGHEICDLIR-HGGLQDFHYIPEKHICFV 448
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 32.3 bits (70), Expect = 0.028
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIK 356
L + NL++D E+E+++LF +G ++L K+K G K
Sbjct: 204 LRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAK 243
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 31.1 bits (67), Expect = 0.065
Identities = 10/32 (31%), Positives = 22/32 (68%)
Frame = +3
Query: 261 DVTEDEIQNLFSPYGESAELFLNKEKNFGFIK 356
+ TE+++++LF+ +G L LN ++ G++K
Sbjct: 20 EATEEQVEDLFADFGPVKNLHLNLDRRTGYVK 51
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 31.1 bits (67), Expect = 0.065
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +3
Query: 234 RLYIGNLTNDVTEDEIQNLFSPYGESAELFL-----NKEKNFGFI 353
RL++GNL NDV ++ + FS Y + + K + FGF+
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDREGKTRGFGFV 75
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 30.3 bits (65), Expect = 0.11
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 231 SRLYIGNLTNDVTEDEIQNLFSPYGESAELF 323
S +Y+GN+ + ++++EI FS YG+ +F
Sbjct: 17 STIYVGNIDSRLSDEEIIKHFSKYGQVESIF 47
Score = 27.1 bits (57), Expect = 1.1
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +3
Query: 231 SRLYIGNLTNDVT--EDEIQNLFSPYGESAELFLNKEKNFGFIK 356
S LY+ NL + V + ++++LFSP+G L N G K
Sbjct: 382 SNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGISK 425
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 29.9 bits (64), Expect = 0.15
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAERAKRE 395
L++GNL + V+ + FS YG + + + K+ F+ D A+ E
Sbjct: 589 LWVGNLPSGVSATTVATTFSAYGTVSSIRMLSHKHSAFLNFDSVETAKHVLEE 641
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 29.5 bits (63), Expect = 0.20
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYGESAEL-FLNKEKN 341
+Y+GNL + ++ LF P+G ++ L+++KN
Sbjct: 22 IYVGNLPSTCQSSDLHELFEPFGNFSKFHMLSRKKN 57
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 29.1 bits (62), Expect = 0.26
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEK 338
+Y+GNL+ TE++I LFS GE + + ++
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDR 67
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 28.3 bits (60), Expect = 0.46
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +3
Query: 222 NGRSRLYIGNLTNDVTEDEIQNLFSPYGE 308
+ + ++YI NL ++ ED++ L P+G+
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGD 335
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 28.3 bits (60), Expect = 0.46
Identities = 11/44 (25%), Positives = 25/44 (56%)
Frame = +3
Query: 231 SRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLD 362
+RL++G + T +++ + F YG+ + L FGF++++
Sbjct: 4 TRLFVGRIPPQATREDMMDFFKGYGQILDCKL--MNGFGFVEVE 45
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 27.1 bits (57), Expect = 1.1
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = +3
Query: 159 LKDLTGPLLDLPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEK 338
L + +LD I K N R+ +T+ +I NL PYGE ++ ++
Sbjct: 138 LSEAQNTILDGRHIRIERAKVNRTIRISSAPHQPYITKKDIDNLLEPYGEVEDVTEIPDQ 197
Query: 339 NFGFIKLDYRVNA 377
+ ++ YR A
Sbjct: 198 SAFLVRFVYRDEA 210
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.1 bits (57), Expect = 1.1
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIK 356
+++GNL+ + TED++ F G+ + L + G +K
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLK 407
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 27.1 bits (57), Expect = 1.1
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 6/45 (13%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKE------KNFGFI 353
L++ + + + EDE+Q +FS +G + + +E + FGF+
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFL 147
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 26.6 bits (56), Expect = 1.4
Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = +3
Query: 228 RSRL-YIGNLTNDVTEDEIQNLFSPYG 305
RS++ ++ LTNDVT+ E+++ F+ +G
Sbjct: 242 RSKIVHVAGLTNDVTQLELESWFTNHG 268
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 26.6 bits (56), Expect = 1.4
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = -1
Query: 356 FDKTKVFLLVQKQFSRFAVRRE*VLDFIFSDIISEVTNIQTAPTVELNFRLIYGR*IKQW 177
F K +F +Q F + +R DFI + ++ +++ TA +V +RL G+ I+ +
Sbjct: 445 FLKAPLFQTLQYLFRLYPYQR----DFIIEESLTNFSHLPTARSVSRTYRLSNGKSIQYY 500
Query: 176 PC*IFQLI 153
+LI
Sbjct: 501 STLFVRLI 508
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 26.2 bits (55), Expect = 1.8
Identities = 11/45 (24%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Frame = +3
Query: 240 YIGNLTNDVTEDEIQNLFSPYGESAELFLN----KEKNFGFIKLD 362
++GNL+ D+TE+++ + F S L ++ + + FG+++ +
Sbjct: 97 HVGNLSFDLTENDLGDFFGEGVTSIRLVIDPLTERSRGFGYVEFE 141
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 25.8 bits (54), Expect = 2.4
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLD 362
LY+ NL + I LFS YG ++++ N + +
Sbjct: 2 LYVSNLPVGTSSSAIHALFSAYGNVKDIWMLSPDNSAIVSYE 43
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 4.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFS 296
+Y+GNL +E+E++ LFS
Sbjct: 428 IYVGNLPPSTSEEELKVLFS 447
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 24.6 bits (51), Expect = 5.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYG 305
+Y+GN+ VT +E+Q+ F+ G
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCG 79
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 24.6 bits (51), Expect = 5.6
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYGESAE 317
+YI L DVT DEI+ +F G A+
Sbjct: 112 VYIQGLPLDVTVDEIEEVFKKCGVIAK 138
>SPBP8B7.11 |nxt3||ubiquitin protease cofactor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 434
Score = 24.6 bits (51), Expect = 5.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 286 TYSLLTANRLNCF*TRRKTLV 348
TY NRL+CF T++ TL+
Sbjct: 28 TYLNKEPNRLHCFYTKKSTLI 48
>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 765
Score = 24.6 bits (51), Expect = 5.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 117 MKPIQREEMMLANKLKDLTGPLLDLPAIDQSEVKFNG 227
+ P+Q+ EM L N L+ L L++PA Q +++ G
Sbjct: 230 LMPVQKCEMHLLNILEQLQPDCLEVPA-GQRQLRCTG 265
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 24.2 bits (50), Expect = 7.4
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = -2
Query: 358 NLIKPKFFSLFKNNSADSP*GENKFWISSSVT 263
+L P F S+ +N+++ +P N+F+++ +T
Sbjct: 237 SLQNPDFISVHENDTSSTPSNLNQFYLTVPLT 268
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 23.8 bits (49), Expect = 9.8
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 243 IGNLTNDVTEDEIQNLFS 296
+GNL N VT+++I+N S
Sbjct: 1631 LGNLLNLVTDEDIENAMS 1648
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 23.8 bits (49), Expect = 9.8
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Frame = +3
Query: 231 SRLYIGNLTNDVTEDEIQNLFSPYGESAELFL--NKE--KNFGFIKLDYRVNAE 380
+ LYI NL E +I LF P + L +KE + GF ++ R AE
Sbjct: 384 TNLYISNLPLHWNESDISTLFKPSKIISNRVLRDSKEQSRGVGFARMQDRKTAE 437
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,545,573
Number of Sequences: 5004
Number of extensions: 26954
Number of successful extensions: 116
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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