Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_D07
(395 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical p... 68 3e-12
U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical p... 68 3e-12
U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical p... 57 5e-09
Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical pr... 43 7e-05
Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical pr... 43 7e-05
Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical pr... 43 7e-05
Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical pr... 42 2e-04
U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical pr... 38 0.003
U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical pr... 38 0.003
U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical pr... 38 0.003
U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical pr... 38 0.003
Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical p... 38 0.003
AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical... 38 0.003
AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger t... 37 0.005
AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical... 36 0.008
AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein. 36 0.008
U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene... 36 0.011
U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprote... 36 0.011
AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical ... 36 0.011
Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical pr... 35 0.024
U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle orienta... 34 0.042
U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein (spl... 34 0.042
U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein (spl... 34 0.042
AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein. 34 0.042
Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical pr... 33 0.056
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 33 0.056
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 33 0.056
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 33 0.056
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 33 0.056
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 33 0.056
Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical pr... 33 0.074
Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical pr... 32 0.13
Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical pr... 31 0.23
Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical pr... 31 0.23
U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein. 31 0.23
AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative RNA-... 31 0.23
AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein... 31 0.23
AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein... 31 0.23
AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization... 31 0.23
AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization... 31 0.23
AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical ... 31 0.30
U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical p... 31 0.40
Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical pr... 30 0.52
U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical pr... 30 0.52
AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna... 30 0.52
AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna... 30 0.52
AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna... 30 0.52
U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor... 30 0.69
U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical pr... 30 0.69
U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical pr... 30 0.69
AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing... 30 0.69
AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing... 30 0.69
AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing... 30 0.69
Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical pr... 29 0.91
U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical p... 29 0.91
AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical ... 29 0.91
AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor pr... 29 1.2
Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical p... 29 1.6
AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous t... 29 1.6
AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous t... 29 1.6
Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical pr... 28 2.1
U24123-1|AAA65224.1| 646|Caenorhabditis elegans polyadenylate-b... 28 2.1
AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical ... 28 2.1
AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical ... 28 2.1
AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical ... 28 2.1
Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical pr... 27 3.7
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 27 3.7
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 27 3.7
AF039719-12|AAB96758.1| 293|Caenorhabditis elegans Hypothetical... 27 6.4
Z81130-10|CAB03418.1| 653|Caenorhabditis elegans Hypothetical p... 26 8.5
Z81130-9|CAI70413.1| 616|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical p... 26 8.5
Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical pr... 26 8.5
U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya bind... 26 8.5
AC024205-5|ABA00164.1| 97|Caenorhabditis elegans Hypothetical ... 26 8.5
>U23172-15|AAN63408.1| 374|Caenorhabditis elegans Hypothetical
protein F25B5.7d protein.
Length = 374
Score = 67.7 bits (158), Expect = 3e-12
Identities = 31/58 (53%), Positives = 43/58 (74%)
Frame = +3
Query: 216 KFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAERAK 389
KF GR RL++GNL N+V E E++ LFSP+G+ AE +L+ K F F++LD R +AE AK
Sbjct: 111 KFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLS-GKGFAFLRLDTRAHAESAK 167
>U23172-12|ABH03526.1| 562|Caenorhabditis elegans Hypothetical
protein F25B5.7a protein.
Length = 562
Score = 67.7 bits (158), Expect = 3e-12
Identities = 31/58 (53%), Positives = 43/58 (74%)
Frame = +3
Query: 216 KFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAERAK 389
KF GR RL++GNL N+V E E++ LFSP+G+ AE +L+ K F F++LD R +AE AK
Sbjct: 111 KFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLS-GKGFAFLRLDTRAHAESAK 167
>U23172-14|AAL02495.1| 165|Caenorhabditis elegans Hypothetical
protein F25B5.7b protein.
Length = 165
Score = 56.8 bits (131), Expect = 5e-09
Identities = 25/48 (52%), Positives = 36/48 (75%)
Frame = +3
Query: 216 KFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKL 359
KF GR RL++GNL N+V E E++ LFSP+G+ AE +L+ K F F++L
Sbjct: 111 KFTGRCRLFVGNLPNEVKETELKELFSPHGDIAECYLS-GKGFAFLRL 157
>Z66521-4|CAD59160.1| 150|Caenorhabditis elegans Hypothetical
protein W02B12.3c protein.
Length = 150
Score = 43.2 bits (97), Expect = 7e-05
Identities = 20/52 (38%), Positives = 35/52 (67%)
Frame = +3
Query: 231 SRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAERA 386
+R+YIG LT+ V+E +I++ F YG+ ++ L + FGF++ D + +AE A
Sbjct: 3 ARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLL--KNGFGFVEFDDKRDAEDA 52
>Z66521-3|CAD59159.1| 148|Caenorhabditis elegans Hypothetical
protein W02B12.3b protein.
Length = 148
Score = 43.2 bits (97), Expect = 7e-05
Identities = 20/52 (38%), Positives = 35/52 (67%)
Frame = +3
Query: 231 SRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAERA 386
+R+YIG LT+ V+E +I++ F YG+ ++ L + FGF++ D + +AE A
Sbjct: 3 ARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLL--KNGFGFVEFDDKRDAEDA 52
>Z66521-2|CAA91395.1| 312|Caenorhabditis elegans Hypothetical
protein W02B12.3a protein.
Length = 312
Score = 43.2 bits (97), Expect = 7e-05
Identities = 20/52 (38%), Positives = 35/52 (67%)
Frame = +3
Query: 231 SRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAERA 386
+R+YIG LT+ V+E +I++ F YG+ ++ L + FGF++ D + +AE A
Sbjct: 3 ARIYIGRLTSRVSEKDIEHFFRGYGQIRDVLL--KNGFGFVEFDDKRDAEDA 52
>Z78536-3|CAB01717.2| 360|Caenorhabditis elegans Hypothetical
protein C07A4.1 protein.
Length = 360
Score = 41.9 bits (94), Expect = 2e-04
Identities = 16/53 (30%), Positives = 35/53 (66%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAERAKRE 395
+Y+GN++ T+ ++++LFS YG+ AE+ + K + + F++ + + A +A E
Sbjct: 239 VYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRYEKKECATKAIME 291
Score = 34.7 bits (76), Expect = 0.024
Identities = 16/56 (28%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYGESAE------LFLNKEKNFGFIKLDYRVNAERA 386
+++G+L+ DV+ + +++ F+ +GE +E + K K +GF+ + NAE A
Sbjct: 137 VFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNAENA 192
>U28944-7|AAN63457.1| 295|Caenorhabditis elegans Hypothetical
protein C18A3.5f protein.
Length = 295
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Frame = +3
Query: 192 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFI 353
P QS++ +++G+L+++V +++ F P+G+ ++ + K K +GF+
Sbjct: 9 PGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFV 68
Query: 354 KLDYRVNAERA 386
R AERA
Sbjct: 69 SYPKREEAERA 79
Score = 37.9 bits (84), Expect = 0.003
Identities = 17/50 (34%), Positives = 32/50 (64%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAERA 386
+Y+GN+ + +TEDEI+ F+ +G E+ + K + + F+K D + A +A
Sbjct: 130 VYVGNIAS-LTEDEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKA 178
>U28944-6|AAN63456.1| 305|Caenorhabditis elegans Hypothetical
protein C18A3.5e protein.
Length = 305
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Frame = +3
Query: 192 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFI 353
P QS++ +++G+L+++V +++ F P+G+ ++ + K K +GF+
Sbjct: 19 PGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFV 78
Query: 354 KLDYRVNAERA 386
R AERA
Sbjct: 79 SYPKREEAERA 89
Score = 37.9 bits (84), Expect = 0.003
Identities = 17/50 (34%), Positives = 32/50 (64%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAERA 386
+Y+GN+ + +TEDEI+ F+ +G E+ + K + + F+K D + A +A
Sbjct: 140 VYVGNIAS-LTEDEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKA 188
>U28944-5|AAK68191.1| 408|Caenorhabditis elegans Hypothetical
protein C18A3.5a protein.
Length = 408
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Frame = +3
Query: 192 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFI 353
P QS++ +++G+L+++V +++ F P+G+ ++ + K K +GF+
Sbjct: 122 PGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFV 181
Query: 354 KLDYRVNAERA 386
R AERA
Sbjct: 182 SYPKREEAERA 192
Score = 37.9 bits (84), Expect = 0.003
Identities = 17/50 (34%), Positives = 32/50 (64%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAERA 386
+Y+GN+ + +TEDEI+ F+ +G E+ + K + + F+K D + A +A
Sbjct: 243 VYVGNIAS-LTEDEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKA 291
Score = 30.3 bits (65), Expect = 0.52
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYG---ESAELFLNKEKNFGFIKLDYRVNAERA 386
LY+GNL + VTED I LF+ G ++ +F + F++ A +A
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDPYAFVEFSDHGQASQA 100
>U28944-4|AAK68192.1| 376|Caenorhabditis elegans Hypothetical
protein C18A3.5b protein.
Length = 376
Score = 37.9 bits (84), Expect = 0.003
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Frame = +3
Query: 192 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFI 353
P QS++ +++G+L+++V +++ F P+G+ ++ + K K +GF+
Sbjct: 90 PGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFV 149
Query: 354 KLDYRVNAERA 386
R AERA
Sbjct: 150 SYPKREEAERA 160
Score = 37.9 bits (84), Expect = 0.003
Identities = 17/50 (34%), Positives = 32/50 (64%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAERA 386
+Y+GN+ + +TEDEI+ F+ +G E+ + K + + F+K D + A +A
Sbjct: 211 VYVGNIAS-LTEDEIRQGFASFGRITEVRIFKMQGYAFVKFDNKDAAAKA 259
Score = 29.9 bits (64), Expect = 0.69
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYG 305
LY+GNL + VTED I LF+ G
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIG 70
>Z32683-11|CAA83626.1| 142|Caenorhabditis elegans Hypothetical
protein R07E5.14 protein.
Length = 142
Score = 37.5 bits (83), Expect = 0.003
Identities = 13/40 (32%), Positives = 26/40 (65%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIK 356
+++ N+ + TED++ + FS YG+ + LN ++ GF+K
Sbjct: 57 VFVTNIHEEATEDDVHDKFSEYGKIKNIHLNLDRRTGFLK 96
>AL117204-22|CAB55151.1| 331|Caenorhabditis elegans Hypothetical
protein Y116A8C.34 protein.
Length = 331
Score = 37.5 bits (83), Expect = 0.003
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 6/61 (9%)
Frame = +3
Query: 222 NGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFIKLDYRVNAER 383
N + LY+G T DVTE + F P+G+ + + K + FGF++ D +A
Sbjct: 8 NRKRTLYVGGFTEDVTEKVLMAAFIPFGDVVAISIPMDYESGKHRGFGFVEFDMAEDAAM 67
Query: 384 A 386
A
Sbjct: 68 A 68
>AF098993-1|AAC67471.2| 367|Caenorhabditis elegans Zinc finger
transcription factorfamily protein 4 protein.
Length = 367
Score = 37.1 bits (82), Expect = 0.005
Identities = 17/56 (30%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +3
Query: 228 RSRLYIGNLTNDV-TEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAERAKR 392
R+R++IGN+ + T D+I LF P+G+ + ++ FGF++ + +A+ + R
Sbjct: 82 RARVFIGNIARAIITRDDIIELFRPFGKIIAVNYFAQQGFGFVQFNEAGSADESCR 137
>AL132904-14|CAC35847.2| 258|Caenorhabditis elegans Hypothetical
protein Y111B2A.18 protein.
Length = 258
Score = 36.3 bits (80), Expect = 0.008
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +3
Query: 234 RLYIGNLTNDVTEDEIQNLFSPYG--ESAELFLNKEKNFGFIKLDYRVNAERAKR 392
++Y+GNL DV E E++++F YG + ++ + F F++ + +AE A R
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVR 64
>AF242767-1|AAG36874.1| 258|Caenorhabditis elegans SF2 protein.
Length = 258
Score = 36.3 bits (80), Expect = 0.008
Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +3
Query: 234 RLYIGNLTNDVTEDEIQNLFSPYG--ESAELFLNKEKNFGFIKLDYRVNAERAKR 392
++Y+GNL DV E E++++F YG + ++ + F F++ + +AE A R
Sbjct: 10 KVYVGNLPGDVREKEVEDIFHKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAVR 64
>U41531-7|AAA83161.2| 415|Caenorhabditis elegans Feminizing gene on
x protein 1 protein.
Length = 415
Score = 35.9 bits (79), Expect = 0.011
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Frame = +3
Query: 222 NGRSRLYIGNLTNDVTEDEIQNLFSPYG--ESAELFLNKE--KNFGFIKLDYRVNAERAK 389
+G RL++ N+ + +++ +F +G E+ N+ K FGF+ ++ +AERA+
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERAR 209
Query: 390 RE 395
+E
Sbjct: 210 QE 211
>U14946-1|AAA67723.1| 415|Caenorhabditis elegans ribonucleoprotein
protein.
Length = 415
Score = 35.9 bits (79), Expect = 0.011
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Frame = +3
Query: 222 NGRSRLYIGNLTNDVTEDEIQNLFSPYG--ESAELFLNKE--KNFGFIKLDYRVNAERAK 389
+G RL++ N+ + +++ +F +G E+ N+ K FGF+ ++ +AERA+
Sbjct: 150 DGPKRLHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERGSKGFGFVTMERPQDAERAR 209
Query: 390 RE 395
+E
Sbjct: 210 QE 211
>AL110485-8|CAB60356.1| 434|Caenorhabditis elegans Hypothetical
protein Y46G5A.13 protein.
Length = 434
Score = 35.9 bits (79), Expect = 0.011
Identities = 17/50 (34%), Positives = 30/50 (60%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAERA 386
+Y+GN+ N + EDEI+ F +G E+ K + + F+K + + +A RA
Sbjct: 258 VYVGNIAN-LGEDEIRRAFDRFGPINEVRTFKIQGYAFVKFETKESAARA 306
Score = 35.1 bits (77), Expect = 0.018
Identities = 18/71 (25%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Frame = +3
Query: 192 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFI 353
P ++S+ + + +++G+L +++ +++ F +GE +E + NK K +GF+
Sbjct: 119 PGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFV 178
Query: 354 KLDYRVNAERA 386
R +AERA
Sbjct: 179 SYPRREDAERA 189
>Z69384-5|CAA93419.2| 408|Caenorhabditis elegans Hypothetical
protein T11G6.8 protein.
Length = 408
Score = 34.7 bits (76), Expect = 0.024
Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +3
Query: 237 LYIGNL----TNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAERA 386
LYIGNL VTE ++ + F YG+ L + EK FI+ R AERA
Sbjct: 237 LYIGNLGPSGAQQVTEKDLNDFFYQYGDIRCLRVLTEKGCAFIEFTTREAAERA 290
>U55363-5|AAA97963.1| 351|Caenorhabditis elegans Spindle
orientation defective protein4 protein.
Length = 351
Score = 33.9 bits (74), Expect = 0.042
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +3
Query: 231 SRLYIGNLTNDVTEDEIQNLFSPYGE--SAELFLNK--EKNFGFIKLDYRVNAERAK 389
+R+Y+ N+ E ++ +F YG S E+ N K FGF+ LD + E+A+
Sbjct: 51 NRIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKAR 107
>U23484-3|AAK68298.1| 126|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform b protein.
Length = 126
Score = 33.9 bits (74), Expect = 0.042
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Frame = +3
Query: 222 NGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKE------KNFGFIKLDYRVNAER 383
NG + L I NL+ T ++++ F YG+ ++ + ++ K FGF++ R +AE
Sbjct: 16 NGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEH 75
Query: 384 A 386
A
Sbjct: 76 A 76
>U23484-2|AAC46767.1| 196|Caenorhabditis elegans Sr protein
(splicing factor) protein4, isoform a protein.
Length = 196
Score = 33.9 bits (74), Expect = 0.042
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Frame = +3
Query: 222 NGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKE------KNFGFIKLDYRVNAER 383
NG + L I NL+ T ++++ F YG+ ++ + ++ K FGF++ R +AE
Sbjct: 16 NGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFVRFYERRDAEH 75
Query: 384 A 386
A
Sbjct: 76 A 76
>AB052819-1|BAC65239.1| 351|Caenorhabditis elegans PIP-1 protein.
Length = 351
Score = 33.9 bits (74), Expect = 0.042
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 4/57 (7%)
Frame = +3
Query: 231 SRLYIGNLTNDVTEDEIQNLFSPYGE--SAELFLNK--EKNFGFIKLDYRVNAERAK 389
+R+Y+ N+ E ++ +F YG S E+ N K FGF+ LD + E+A+
Sbjct: 51 NRIYVSNIPFSFREQDLAAMFFAYGRVLSVEIVTNDRGSKGFGFVTLDSIESCEKAR 107
>Z83230-6|CAB05746.1| 336|Caenorhabditis elegans Hypothetical
protein F56A8.6 protein.
Length = 336
Score = 33.5 bits (73), Expect = 0.056
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Frame = +3
Query: 222 NGRSR--LYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFIKLDYRVNA 377
N RS+ +++GN++ DV+ED I+++FS G + + K K +GFI+ A
Sbjct: 13 NDRSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTA 72
Query: 378 ERAKR 392
E A R
Sbjct: 73 EVAIR 77
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 33.5 bits (73), Expect = 0.056
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Frame = +3
Query: 177 PLLDLPAIDQSEVKFN-GRSRLYIGNLTNDVTEDEIQNLFSPYG--ESAELFLN----KE 335
P +P D++ + N RLY+ + D TED + F+ YG +E+ L+ K
Sbjct: 95 PKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKP 154
Query: 336 KNFGFIKLD 362
+ FGF+ D
Sbjct: 155 RGFGFVTFD 163
Score = 33.1 bits (72), Expect = 0.074
Identities = 12/60 (20%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Frame = +3
Query: 234 RLYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFIKLDYRVNAERAKRE 395
++++G LT++ T+D ++ +S +GE ++ + + + FGF+ + + A ++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 33.5 bits (73), Expect = 0.056
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Frame = +3
Query: 177 PLLDLPAIDQSEVKFN-GRSRLYIGNLTNDVTEDEIQNLFSPYG--ESAELFLN----KE 335
P +P D++ + N RLY+ + D TED + F+ YG +E+ L+ K
Sbjct: 57 PKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKP 116
Query: 336 KNFGFIKLD 362
+ FGF+ D
Sbjct: 117 RGFGFVTFD 125
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 33.5 bits (73), Expect = 0.056
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Frame = +3
Query: 177 PLLDLPAIDQSEVKFN-GRSRLYIGNLTNDVTEDEIQNLFSPYG--ESAELFLN----KE 335
P +P D++ + N RLY+ + D TED + F+ YG +E+ L+ K
Sbjct: 57 PKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKP 116
Query: 336 KNFGFIKLD 362
+ FGF+ D
Sbjct: 117 RGFGFVTFD 125
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 33.5 bits (73), Expect = 0.056
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Frame = +3
Query: 177 PLLDLPAIDQSEVKFN-GRSRLYIGNLTNDVTEDEIQNLFSPYG--ESAELFLN----KE 335
P +P D++ + N RLY+ + D TED + F+ YG +E+ L+ K
Sbjct: 95 PKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKP 154
Query: 336 KNFGFIKLD 362
+ FGF+ D
Sbjct: 155 RGFGFVTFD 163
Score = 33.1 bits (72), Expect = 0.074
Identities = 12/60 (20%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Frame = +3
Query: 234 RLYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFIKLDYRVNAERAKRE 395
++++G LT++ T+D ++ +S +GE ++ + + + FGF+ + + A ++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 33.5 bits (73), Expect = 0.056
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Frame = +3
Query: 177 PLLDLPAIDQSEVKFN-GRSRLYIGNLTNDVTEDEIQNLFSPYG--ESAELFLN----KE 335
P +P D++ + N RLY+ + D TED + F+ YG +E+ L+ K
Sbjct: 95 PKRAVPRDDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKP 154
Query: 336 KNFGFIKLD 362
+ FGF+ D
Sbjct: 155 RGFGFVTFD 163
Score = 33.1 bits (72), Expect = 0.074
Identities = 12/60 (20%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Frame = +3
Query: 234 RLYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFIKLDYRVNAERAKRE 395
++++G LT++ T+D ++ +S +GE ++ + + + FGF+ + + A ++
Sbjct: 24 KIFVGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAMKQ 83
>Z66521-8|CAA91394.1| 281|Caenorhabditis elegans Hypothetical
protein W02B12.2 protein.
Length = 281
Score = 33.1 bits (72), Expect = 0.074
Identities = 14/51 (27%), Positives = 31/51 (60%)
Frame = +3
Query: 234 RLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAERA 386
R+YIG L N ++ ++++ F YG+ +++ + + FGF+ + +A+ A
Sbjct: 3 RVYIGRLPNRASDRDVEHFFRGYGKLSDVIM--KNGFGFVDFQDQRDADDA 51
>Z83127-4|CAB05631.1| 872|Caenorhabditis elegans Hypothetical
protein T23F6.4 protein.
Length = 872
Score = 32.3 bits (70), Expect = 0.13
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +3
Query: 234 RLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIK 356
RL++ NL ED++Q LF YGE +E+ + +K G K
Sbjct: 280 RLFLRNLPYATKEDDLQFLFKKYGEVSEVQVVIDKKTGACK 320
>Z81473-3|CAB03896.4| 514|Caenorhabditis elegans Hypothetical
protein C17D12.2 protein.
Length = 514
Score = 31.5 bits (68), Expect = 0.23
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Frame = +3
Query: 234 RLYIGNLTNDVTEDEIQNLFSPYGESAELFL-----NKEKNFGFIKLDYRVNAERA 386
+L+IG L+ +EDE++ LF+ +GE E+ + K F+K + ++A A
Sbjct: 125 KLFIGMLSKQQSEDEVRALFATFGELDEVTVLRGADGASKGCAFVKYKHGLDAHMA 180
Score = 29.5 bits (63), Expect = 0.91
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +3
Query: 234 RLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIK 356
+L++G + ++ E ++++LF +G+ E + K+K G K
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHK 70
>Z78019-5|CAB01455.1| 305|Caenorhabditis elegans Hypothetical
protein ZK863.7 protein.
Length = 305
Score = 31.5 bits (68), Expect = 0.23
Identities = 12/44 (27%), Positives = 29/44 (65%)
Frame = +3
Query: 231 SRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLD 362
S+L++GNL ++V ++++ +F P+ + E + KN+ F+ ++
Sbjct: 3 SKLFVGNLPDNVDSNKLKQVFQPFCKVTECDI--VKNYAFVHIE 44
>U21302-2|AAA92287.1| 305|Caenorhabditis elegans RNP-1 protein.
Length = 305
Score = 31.5 bits (68), Expect = 0.23
Identities = 12/44 (27%), Positives = 29/44 (65%)
Frame = +3
Query: 231 SRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLD 362
S+L++GNL ++V ++++ +F P+ + E + KN+ F+ ++
Sbjct: 3 SKLFVGNLPDNVDSNKLKQVFQPFCKVTECDI--VKNYAFVHIE 44
>AY342388-1|AAQ19851.1| 514|Caenorhabditis elegans putative
RNA-binding protein protein.
Length = 514
Score = 31.5 bits (68), Expect = 0.23
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 5/56 (8%)
Frame = +3
Query: 234 RLYIGNLTNDVTEDEIQNLFSPYGESAELFL-----NKEKNFGFIKLDYRVNAERA 386
+L+IG L+ +EDE++ LF+ +GE E+ + K F+K + ++A A
Sbjct: 125 KLFIGMLSKQQSEDEVRALFATFGELDEVTVLRGADGASKGCAFVKYKHGLDAHMA 180
Score = 29.5 bits (63), Expect = 0.91
Identities = 11/41 (26%), Positives = 25/41 (60%)
Frame = +3
Query: 234 RLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIK 356
+L++G + ++ E ++++LF +G+ E + K+K G K
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHK 70
>AJ297847-1|CAC16732.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 31.5 bits (68), Expect = 0.23
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAER 383
+++G L VT +EI +FS +G + ++ ++++G+ K RV ER
Sbjct: 321 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFER 369
>AJ297846-1|CAC16731.1| 619|Caenorhabditis elegans FOG-1 protein
protein.
Length = 619
Score = 31.5 bits (68), Expect = 0.23
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAER 383
+++G L VT +EI +FS +G + ++ ++++G+ K RV ER
Sbjct: 321 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFER 369
>AC024810-13|AAK68518.1| 405|Caenorhabditis elegans Feminization of
germline protein1, isoform a protein.
Length = 405
Score = 31.5 bits (68), Expect = 0.23
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAER 383
+++G L VT +EI +FS +G + ++ ++++G+ K RV ER
Sbjct: 107 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFER 155
>AC024810-12|AAK68519.1| 619|Caenorhabditis elegans Feminization of
germline protein1, isoform b protein.
Length = 619
Score = 31.5 bits (68), Expect = 0.23
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAER 383
+++G L VT +EI +FS +G + ++ ++++G+ K RV ER
Sbjct: 321 VFLGGLPRIVTAEEIAQMFSEFGVVLLVTIDIDQDYGYPKGAARVTFER 369
>AL137227-1|CAB70238.2| 611|Caenorhabditis elegans Hypothetical
protein F58D5.1 protein.
Length = 611
Score = 31.1 bits (67), Expect = 0.30
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAERAKRE 395
LYI N+ VTE+++ LF Y + K K++ FI + R + +A E
Sbjct: 379 LYIRNIKEAVTEEKLNELFKEYASLDR--VKKVKDYAFIHFNERDDCLKAMEE 429
>U23484-11|AAC46764.2| 191|Caenorhabditis elegans Hypothetical
protein EEED8.4 protein.
Length = 191
Score = 30.7 bits (66), Expect = 0.40
Identities = 19/72 (26%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Frame = +3
Query: 189 LPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGE------SAELFLNKEKNFGF 350
+P ++ + + +S ++IGN+ + T +EI+ F G+ + F K+KNF +
Sbjct: 42 VPPTEEEQKAIDAKS-VFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAY 100
Query: 351 IKLDYRVNAERA 386
I+ D + E A
Sbjct: 101 IEFDDSSSIENA 112
>Z81108-1|CAB03236.1| 83|Caenorhabditis elegans Hypothetical
protein R09B3.2 protein.
Length = 83
Score = 30.3 bits (65), Expect = 0.52
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Frame = +3
Query: 222 NGRSRLYIGNLTNDVTEDEIQNLFSPYGE--SAELFLNKE----KNFGFIKLDYRVNAER 383
+G +Y+GN TE+E+ N FS G+ + + ++E + F FI+ +A+R
Sbjct: 2 SGIFSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQR 61
Query: 384 A 386
A
Sbjct: 62 A 62
>U23450-2|AAK31468.1| 302|Caenorhabditis elegans Hypothetical
protein C30B5.4 protein.
Length = 302
Score = 30.3 bits (65), Expect = 0.52
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFG 347
+YIG L+ ++E ++ +FS YGE + L ++K+ G
Sbjct: 40 IYIGGLSYALSEGDVIAVFSQYGEVMNINLIRDKDTG 76
>AC024791-23|AAM81102.1| 346|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform c protein.
Length = 346
Score = 30.3 bits (65), Expect = 0.52
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +3
Query: 231 SRLYIGNLTNDVTEDEIQNLFSPYG 305
SR+Y+G+++ ++ ED ++ F P+G
Sbjct: 102 SRIYVGSISFEIREDMLRRAFDPFG 126
Score = 27.1 bits (57), Expect = 4.9
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +3
Query: 192 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGE 308
P ID + R+Y+ ++ D++E +++++F +GE
Sbjct: 194 PIIDMVQKDAKKYFRVYVSSVHPDLSETDLKSVFEAFGE 232
>AC024791-22|AAF60676.1| 339|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform a protein.
Length = 339
Score = 30.3 bits (65), Expect = 0.52
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +3
Query: 231 SRLYIGNLTNDVTEDEIQNLFSPYG 305
SR+Y+G+++ ++ ED ++ F P+G
Sbjct: 102 SRIYVGSISFEIREDMLRRAFDPFG 126
Score = 27.1 bits (57), Expect = 4.9
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +3
Query: 192 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGE 308
P ID + R+Y+ ++ D++E +++++F +GE
Sbjct: 194 PIIDMVQKDAKKYFRVYVSSVHPDLSETDLKSVFEAFGE 232
>AC024791-21|AAF60666.1| 749|Caenorhabditis elegans Rnp (rrm rna
binding domain) containingprotein 6, isoform b protein.
Length = 749
Score = 30.3 bits (65), Expect = 0.52
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +3
Query: 231 SRLYIGNLTNDVTEDEIQNLFSPYG 305
SR+Y+G+++ ++ ED ++ F P+G
Sbjct: 102 SRIYVGSISFEIREDMLRRAFDPFG 126
Score = 27.1 bits (57), Expect = 4.9
Identities = 10/39 (25%), Positives = 23/39 (58%)
Frame = +3
Query: 192 PAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGE 308
P ID + R+Y+ ++ D++E +++++F +GE
Sbjct: 194 PIIDMVQKDAKKYFRVYVSSVHPDLSETDLKSVFEAFGE 232
>U79157-1|AAC26982.1| 496|Caenorhabditis elegans splicing factor
U2AF65 protein.
Length = 496
Score = 29.9 bits (64), Expect = 0.69
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 207 SEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLN 329
S + + ++++IG L N +TED+++ L +G LN
Sbjct: 283 STIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLN 323
>U58746-2|AAB00622.2| 283|Caenorhabditis elegans Hypothetical
protein R05G6.7 protein.
Length = 283
Score = 29.9 bits (64), Expect = 0.69
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 291 FSPYGESAELFLNKEKNFGFIKLDYRVNA 377
F+ G+SA+ NK NFGF+K+D A
Sbjct: 6 FADLGKSAKDLFNKGYNFGFLKIDSTTRA 34
>U28944-8|AAK68193.1| 103|Caenorhabditis elegans Hypothetical
protein C18A3.5c protein.
Length = 103
Score = 29.9 bits (64), Expect = 0.69
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYG 305
LY+GNL + VTED I LF+ G
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIG 70
>AC024875-3|AAK29989.1| 496|Caenorhabditis elegans U2af splicing
factor protein 1,isoform a protein.
Length = 496
Score = 29.9 bits (64), Expect = 0.69
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 207 SEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLN 329
S + + ++++IG L N +TED+++ L +G LN
Sbjct: 283 STIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLN 323
>AC024875-2|AAM44400.1| 471|Caenorhabditis elegans U2af splicing
factor protein 1,isoform d protein.
Length = 471
Score = 29.9 bits (64), Expect = 0.69
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 207 SEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLN 329
S + + ++++IG L N +TED+++ L +G LN
Sbjct: 258 STIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLN 298
>AC024875-1|AAL00879.1| 474|Caenorhabditis elegans U2af splicing
factor protein 1,isoform c protein.
Length = 474
Score = 29.9 bits (64), Expect = 0.69
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +3
Query: 207 SEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLN 329
S + + ++++IG L N +TED+++ L +G LN
Sbjct: 261 STIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLN 301
>Z81106-3|CAB03222.1| 84|Caenorhabditis elegans Hypothetical
protein R06C1.4 protein.
Length = 84
Score = 29.5 bits (63), Expect = 0.91
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYG--ESAELFLNKE----KNFGFIKLDYRVNAERA 386
+Y+GN+ TE+EI N F+ G + + ++E + F F++ A+RA
Sbjct: 8 VYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRA 63
>U23484-10|AAC46772.1| 197|Caenorhabditis elegans Hypothetical
protein EEED8.12 protein.
Length = 197
Score = 29.5 bits (63), Expect = 0.91
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Frame = +3
Query: 189 LPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESA------ELFLNKEKNFGF 350
+P ++ + + +S ++IGN+ + T +E++ F G + F K+KNF +
Sbjct: 48 VPPTEEEQKAIDAKS-VFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAY 106
Query: 351 IKLDYRVNAERA 386
I+ D + E A
Sbjct: 107 IEFDDSSSIENA 118
>AF038623-4|AAO91699.1| 177|Caenorhabditis elegans Hypothetical
protein T08B6.5 protein.
Length = 177
Score = 29.5 bits (63), Expect = 0.91
Identities = 22/77 (28%), Positives = 39/77 (50%)
Frame = +3
Query: 126 IQREEMMLANKLKDLTGPLLDLPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPYG 305
+ EEM L + + + P ++ E K + RS +Y+GN+ T EI+ F+ G
Sbjct: 14 VTAEEMELLKQALSASKKYM-APTAEEQE-KTDARS-VYVGNVDWKSTVSEIEEHFAVCG 70
Query: 306 ESAELFLNKEKNFGFIK 356
+ A + + K+K G+ K
Sbjct: 71 KVARVTIPKDKFTGYQK 87
>AF047662-1|AAC04442.1| 248|Caenorhabditis elegans Suppressor
protein 12 protein.
Length = 248
Score = 29.1 bits (62), Expect = 1.2
Identities = 13/61 (21%), Positives = 31/61 (50%), Gaps = 6/61 (9%)
Frame = +3
Query: 231 SRLYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFIKLDYRVNAERAKR 392
+++++G L ++ + F +G+ E + K + +GF+ + R +AERA +
Sbjct: 35 TKIFVGGLPYHTSDKTLHEYFEQFGDIEEAVVITDRNTQKSRGYGFVTMKDRASAERACK 94
Query: 393 E 395
+
Sbjct: 95 D 95
>Z81108-4|CAB03237.1| 85|Caenorhabditis elegans Hypothetical
protein R09B3.3 protein.
Length = 85
Score = 28.7 bits (61), Expect = 1.6
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYGESAELFL------NKEKNFGFIKLDYRVNAERA 386
+Y+GN TED++ N FS G + + + + + F F++ A+RA
Sbjct: 6 VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRA 61
>Z73102-13|CAA97405.1| 836|Caenorhabditis elegans Hypothetical
protein B0035.12 protein.
Length = 836
Score = 28.7 bits (61), Expect = 1.6
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Frame = +3
Query: 228 RSRLYIGNLTNDVTEDEIQNLFSPYG--ESAELFLNKE---KNFGFIKLDYRVNAER 383
+S++++ N+ T+DE++ LFS +G S +K+ K F+ D +A++
Sbjct: 682 KSKVFVRNVHFQATDDELKALFSKFGTVTSVRRVTHKDGKPKGIAFVDFDTEASAQK 738
>AC084197-11|AAM44397.1| 305|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform a
protein.
Length = 305
Score = 28.7 bits (61), Expect = 1.6
Identities = 10/44 (22%), Positives = 26/44 (59%)
Frame = +3
Query: 216 KFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFG 347
K N ++++G ++ +V +++ + F+ YGE A+ + ++ G
Sbjct: 24 KGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNG 67
>AC084197-10|AAY43984.1| 308|Caenorhabditis elegans Homologous to
drosophila sqd (squid)protein protein 1, isoform b
protein.
Length = 308
Score = 28.7 bits (61), Expect = 1.6
Identities = 10/44 (22%), Positives = 26/44 (59%)
Frame = +3
Query: 216 KFNGRSRLYIGNLTNDVTEDEIQNLFSPYGESAELFLNKEKNFG 347
K N ++++G ++ +V +++ + F+ YGE A+ + ++ G
Sbjct: 24 KGNEDKKIFVGGISPEVNNEDLSSHFTQYGEVAQAQVKYDRTNG 67
>Z36752-6|CAA85327.1| 456|Caenorhabditis elegans Hypothetical
protein F35H8.5 protein.
Length = 456
Score = 28.3 bits (60), Expect = 2.1
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +3
Query: 231 SRLYIGNLTNDVTEDEIQNLFSPYGE------SAELFLNKEKNFGFIKLDYRVNAERA 386
S LY+ + +T E++++F P+G+ ++ K GF++ D + A+ A
Sbjct: 128 SNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEADVA 185
>U24123-1|AAA65224.1| 646|Caenorhabditis elegans
polyadenylate-binding protein protein.
Length = 646
Score = 28.3 bits (60), Expect = 2.1
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +3
Query: 216 KFNGRSRLYIGNLTNDVTEDEIQNLFSPYGE--SAELFLN---KEKNFGFIKLDYRVNAE 380
K+ G + LY+ NL V +D ++ F YG SA++ + + K FGF+ + A
Sbjct: 313 KYQGVN-LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEAT 371
Query: 381 RAKRE 395
A E
Sbjct: 372 SAVTE 376
>AL032631-4|CAE54917.1| 586|Caenorhabditis elegans Hypothetical
protein Y106G6H.2c protein.
Length = 586
Score = 28.3 bits (60), Expect = 2.1
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +3
Query: 216 KFNGRSRLYIGNLTNDVTEDEIQNLFSPYGE--SAELFLN---KEKNFGFIKLDYRVNAE 380
K+ G + LY+ NL V +D ++ F YG SA++ + + K FGF+ + A
Sbjct: 253 KYQGVN-LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEAT 311
Query: 381 RAKRE 395
A E
Sbjct: 312 SAVTE 316
>AL032631-3|CAE54916.1| 583|Caenorhabditis elegans Hypothetical
protein Y106G6H.2b protein.
Length = 583
Score = 28.3 bits (60), Expect = 2.1
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +3
Query: 216 KFNGRSRLYIGNLTNDVTEDEIQNLFSPYGE--SAELFLN---KEKNFGFIKLDYRVNAE 380
K+ G + LY+ NL V +D ++ F YG SA++ + + K FGF+ + A
Sbjct: 250 KYQGVN-LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEAT 308
Query: 381 RAKRE 395
A E
Sbjct: 309 SAVTE 313
>AL032631-2|CAA21572.1| 646|Caenorhabditis elegans Hypothetical
protein Y106G6H.2a protein.
Length = 646
Score = 28.3 bits (60), Expect = 2.1
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = +3
Query: 216 KFNGRSRLYIGNLTNDVTEDEIQNLFSPYGE--SAELFLN---KEKNFGFIKLDYRVNAE 380
K+ G + LY+ NL V +D ++ F YG SA++ + + K FGF+ + A
Sbjct: 313 KYQGVN-LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEAT 371
Query: 381 RAKRE 395
A E
Sbjct: 372 SAVTE 376
>Z78419-2|CAB01702.1| 154|Caenorhabditis elegans Hypothetical
protein F26A3.2 protein.
Length = 154
Score = 27.5 bits (58), Expect = 3.7
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Frame = +3
Query: 237 LYIGNLTNDVTEDEIQNLFSPYGESAELFLN----KEKNFGFIKLDY--RVNAERA 386
LY+GNL+ ED++ LF G+ + + K+ GF ++Y R +AE A
Sbjct: 39 LYVGNLSYYTKEDQVYELFGRAGDVRRVIMGLDRFKKTPCGFCFVEYYTREDAELA 94
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 27.5 bits (58), Expect = 3.7
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Frame = +3
Query: 138 EMMLANKLKDLTGPLLDLPAI---DQSEVKFNGRSR-LYIGNLTNDVTEDEIQNLFSPYG 305
+ +L N+ +L G +D P + +++ K +++ ++IG L+ T ++++ F YG
Sbjct: 100 DKVLNNREHELDGKKID-PKVAFPKRTQAKLVTKTKKVFIGGLSATSTLEDMKQYFETYG 158
Query: 306 --ESAELFLNK----EKNFGFIKLD 362
E A L +K + FGF+ D
Sbjct: 159 KVEDAMLMFDKATQRHRGFGFVTFD 183
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 27.5 bits (58), Expect = 3.7
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 10/85 (11%)
Frame = +3
Query: 138 EMMLANKLKDLTGPLLDLPAI---DQSEVKFNGRSR-LYIGNLTNDVTEDEIQNLFSPYG 305
+ +L N+ +L G +D P + +++ K +++ ++IG L+ T ++++ F YG
Sbjct: 100 DKVLNNREHELDGKKID-PKVAFPKRTQAKLVTKTKKVFIGGLSATSTLEDMKQYFETYG 158
Query: 306 --ESAELFLNK----EKNFGFIKLD 362
E A L +K + FGF+ D
Sbjct: 159 KVEDAMLMFDKATQRHRGFGFVTFD 183
>AF039719-12|AAB96758.1| 293|Caenorhabditis elegans Hypothetical
protein K04F10.7 protein.
Length = 293
Score = 26.6 bits (56), Expect = 6.4
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 270 EDEIQNLFSPYGESAELFLNKEKNFGFIKLDYRVNAERAKRE 395
EDEI+ L + E +L +K+K +K D + N ++ RE
Sbjct: 225 EDEIRRLKTLLAEKDQLIFDKDKQISNLKAD-QYNLDKKHRE 265
>Z81130-10|CAB03418.1| 653|Caenorhabditis elegans Hypothetical
protein T23G11.6a protein.
Length = 653
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 111 DNMKPIQREEMMLANKLKDLTGPLLDLPAIDQSEVKFN 224
+N K ++ + NKLK L + +LPAI+ +V N
Sbjct: 419 ENQKDSLKKLNLQKNKLKSLPNLIKNLPAIESLDVSSN 456
>Z81130-9|CAI70413.1| 616|Caenorhabditis elegans Hypothetical
protein T23G11.6b protein.
Length = 616
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 111 DNMKPIQREEMMLANKLKDLTGPLLDLPAIDQSEVKFN 224
+N K ++ + NKLK L + +LPAI+ +V N
Sbjct: 419 ENQKDSLKKLNLQKNKLKSLPNLIKNLPAIESLDVSSN 456
>Z49911-11|CAA90135.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 189 LPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPY 302
LPA S R +Y+GNL V +E+ LF+ Y
Sbjct: 149 LPADTDSAKVEEIRRTVYVGNLPKGVDGNEVLELFNMY 186
>Z36948-6|CAA85414.2| 452|Caenorhabditis elegans Hypothetical
protein D2089.1a protein.
Length = 452
Score = 26.2 bits (55), Expect = 8.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 189 LPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPY 302
LPA S R +Y+GNL V +E+ LF+ Y
Sbjct: 149 LPADTDSAKVEEIRRTVYVGNLPKGVDGNEVLELFNMY 186
>U23450-1|AAK31467.2| 422|Caenorhabditis elegans Cpeb polya binding
family protein 2 protein.
Length = 422
Score = 26.2 bits (55), Expect = 8.5
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +3
Query: 234 RLYIGNLTNDVTEDEIQNLFSPYG 305
++++G L + V E +I N FS YG
Sbjct: 89 KVFVGGLPSCVKESDILNFFSRYG 112
>AC024205-5|ABA00164.1| 97|Caenorhabditis elegans Hypothetical
protein Y73C8B.5 protein.
Length = 97
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = +3
Query: 138 EMMLANKLKDLTGPLLDLPAIDQSEVKFNGRSRLYIGNLTNDVTEDEIQNLFSPY 302
E + + L++LTG +L L + QSE F + + + ++ E++ LFS +
Sbjct: 3 ETICIDALQELTGAMLSLRGLAQSEENFKKVFQEFDEDGNGFISVAELEPLFSNF 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,361,632
Number of Sequences: 27780
Number of extensions: 147686
Number of successful extensions: 488
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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