Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_D06
         (240 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    35   0.002
SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyce...    27   0.44 
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    26   0.58 
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    24   3.1  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    23   4.1  
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S...    23   5.4  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    23   5.4  
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ...    23   7.1  
SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr...    23   7.1  
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    23   7.1  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    22   9.4  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    22   9.4  
SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 compon...    22   9.4  

>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 34.7 bits (76), Expect = 0.002
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +2

Query: 122 SVPATAPMETQNQDAARSPGEVPKDPGKMFVGGLSWQTS 238
           ++  +  ME+ N+D A       ++ GKMF+GGL+W+T+
Sbjct: 138 ALTGSGAMES-NEDNAEETSPFNREDGKMFIGGLNWETT 175


>SPBC1685.10 |rps27||40S ribosomal protein S27|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 83

 Score = 26.6 bits (56), Expect = 0.44
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 150 VSMGAVAGTLCEPVGGRTRL 91
           V  G+ A  LC+P GG+ RL
Sbjct: 54  VICGSCASVLCQPTGGKARL 73


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 17/49 (34%), Positives = 20/49 (40%)
 Frame = +2

Query: 89  RSLVRPPTGSQSVPATAPMETQNQDAARSPGEVPKDPGKMFVGGLSWQT 235
           R LVR P  S   P T P   + Q   RS      D G + + G  W T
Sbjct: 403 RPLVRDP--STVPPGTDPTTGETQGLVRSHFIFKSDTGLLTISGGKWTT 449


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1428

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 16  LRNSTRVGSAPSDSGSRPRRVIAIS 90
           L NST+ G A     + PRR+ AIS
Sbjct: 669 LENSTKNGKAVKIYVTEPRRISAIS 693


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 221 VLRRTSSRGPWAPLRGYGPHPGFGSPW 141
           ++R  + RGPW+P     P+P F   W
Sbjct: 339 MIRNPNYRGPWSP--PMIPNPEFIGEW 363


>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +2

Query: 53 TPGAVPAASSLFRSL 97
          TPG VP+ S+L+R L
Sbjct: 37 TPGVVPSVSTLWRLL 51


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 104 PPTGSQSVPATAPMETQNQDAARS 175
           PP G+ S+P +AP+  +    A S
Sbjct: 341 PPVGNFSLPPSAPVREKRNRPAHS 364


>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
           Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +2

Query: 62  AVPAASSLFRSLVRPPTGSQSVPATAPMETQNQDAARSPGEVPKDPG 202
           +VP      +S V    GS +    A   +QN    R+P E  K PG
Sbjct: 60  SVPLPLPKRKSSVEKRAGSVASAVAAMSLSQNSGEKRTPEEPRKLPG 106


>SPAC57A10.07 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 311

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +2

Query: 188 PKDPGKMFVGGLSW 229
           P DP K F G L W
Sbjct: 298 PSDPSKFFNGKLPW 311


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = +2

Query: 83  LFRSLVRPPTGSQSVPATAPME 148
           LFR L  P   + S PAT P E
Sbjct: 853 LFRPLRSPALNTFSTPATEPPE 874


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 225 LSPPTNIFPGSLGTSPGLRAASWFWVSMGAV 133
           +  P  I P  +  +PG++A+ W W S+G V
Sbjct: 858 IGTPDYIAPEVILGNPGIKASDW-W-SLGCV 886


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +3

Query: 159 RMRPVAPERCPRTPGRCSSEDSAGR 233
           R   VA +RC R   RC+  D  G+
Sbjct: 10  RRTAVACDRCRRRKIRCTGSDIPGQ 34


>SPBC776.15c |||dihydrolipoamide S-succinyltransferase, e2 component
           of oxoglutarate dehydrogenase complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 104 PPTGSQSVPATAPMETQNQDAARSPGEVPKDPGK 205
           PP G  + P    ++T + DAA+     P+D  K
Sbjct: 122 PPEGGSAGPKKDEVKTADADAAKDL-STPQDSSK 154


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 919,199
Number of Sequences: 5004
Number of extensions: 14629
Number of successful extensions: 59
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 59
effective length of database: 2,067,242
effective search space used: 41344840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)