Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_D06
(240 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical pr... 37 0.002
AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural RNA-bi... 37 0.002
AL117202-4|CAB55095.3| 222|Caenorhabditis elegans Hypothetical ... 31 0.082
U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna b... 27 2.3
U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type ribon... 27 2.3
EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA... 27 2.3
EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA... 27 2.3
EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA... 27 2.3
EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA... 27 2.3
EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA... 27 2.3
Z46787-10|CAA86749.1| 154|Caenorhabditis elegans Hypothetical p... 26 4.1
U88314-8|AAF99888.1| 249|Caenorhabditis elegans Pharyngeal glan... 26 4.1
U88314-7|AAF99887.2| 294|Caenorhabditis elegans Pharyngeal glan... 26 4.1
U88314-6|AAF99886.1| 240|Caenorhabditis elegans Hypothetical pr... 26 4.1
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g... 25 5.4
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ... 25 5.4
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 25 5.4
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 25 5.4
Z81587-6|CAB04704.1| 417|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z68106-7|CAA92131.1| 72|Caenorhabditis elegans Hypothetical pr... 25 7.2
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 25 7.2
U70846-2|ABI18146.1| 647|Caenorhabditis elegans Hypothetical pr... 25 9.5
U70846-1|AAB09104.4| 510|Caenorhabditis elegans Hypothetical pr... 25 9.5
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 25 9.5
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 25 9.5
>Z35601-1|CAA84667.2| 320|Caenorhabditis elegans Hypothetical
protein R10E9.1 protein.
Length = 320
Score = 36.7 bits (81), Expect = 0.002
Identities = 13/16 (81%), Positives = 16/16 (100%)
Frame = +2
Query: 191 KDPGKMFVGGLSWQTS 238
+DPGKMF+GGLSWQT+
Sbjct: 42 QDPGKMFIGGLSWQTT 57
>AB036738-1|BAB13470.1| 320|Caenorhabditis elegans neural
RNA-binding protein MSI-1 protein.
Length = 320
Score = 36.7 bits (81), Expect = 0.002
Identities = 13/16 (81%), Positives = 16/16 (100%)
Frame = +2
Query: 191 KDPGKMFVGGLSWQTS 238
+DPGKMF+GGLSWQT+
Sbjct: 42 QDPGKMFIGGLSWQTT 57
>AL117202-4|CAB55095.3| 222|Caenorhabditis elegans Hypothetical
protein Y47D3A.5 protein.
Length = 222
Score = 31.5 bits (68), Expect = 0.082
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Frame = +2
Query: 86 FRSLVRPPTGSQSVPATAPMETQNQDAARSPGE----VPKDPGKMFVGGLSWQTS 238
FRS+ P T S++ P T P +T R+P P+ PGK+ + + Q S
Sbjct: 70 FRSVRLPRTPSRNSPLTPPTKTPPHTPTRTPTTESPVAPRTPGKVVISSVEKQES 124
>U80455-1|AAB37881.1| 584|Caenorhabditis elegans Elav-type rna
binding protein familyprotein 1, isoform a protein.
Length = 584
Score = 26.6 bits (56), Expect = 2.3
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 92 SLVRPPTGSQSVPA--TAPMETQNQDAARSPGEVPKDPGKMFVGGLSWQ 232
S+V P S + A T P + D + SP E D KMFVG + Q
Sbjct: 17 SVVVPIAESTVINAKDTTPSTAADNDVSPSPSEPDTDAIKMFVGQIPRQ 65
>U53931-1|AAA98566.1| 584|Caenorhabditis elegans elav-type
ribonucleoprotein protein.
Length = 584
Score = 26.6 bits (56), Expect = 2.3
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 92 SLVRPPTGSQSVPA--TAPMETQNQDAARSPGEVPKDPGKMFVGGLSWQ 232
S+V P S + A T P + D + SP E D KMFVG + Q
Sbjct: 17 SVVVPIAESTVINAKDTTPSTAADNDVSPSPSEPDTDAIKMFVGQIPRQ 65
>EF523770-1|ABS18836.1| 513|Caenorhabditis elegans ELAV-type RNA
binding protein variantE protein.
Length = 513
Score = 26.6 bits (56), Expect = 2.3
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 92 SLVRPPTGSQSVPA--TAPMETQNQDAARSPGEVPKDPGKMFVGGLSWQ 232
S+V P S + A T P + D + SP E D KMFVG + Q
Sbjct: 17 SVVVPIAESTVINAKDTTPSTAADNDVSPSPSEPDTDAIKMFVGQIPRQ 65
>EF523769-1|ABS18835.1| 327|Caenorhabditis elegans ELAV-type RNA
binding protein variantD protein.
Length = 327
Score = 26.6 bits (56), Expect = 2.3
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 92 SLVRPPTGSQSVPA--TAPMETQNQDAARSPGEVPKDPGKMFVGGLSWQ 232
S+V P S + A T P + D + SP E D KMFVG + Q
Sbjct: 17 SVVVPIAESTVINAKDTTPSTAADNDVSPSPSEPDTDAIKMFVGQIPRQ 65
>EF523768-1|ABS18834.1| 378|Caenorhabditis elegans ELAV-type RNA
binding protein variantC protein.
Length = 378
Score = 26.6 bits (56), Expect = 2.3
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 92 SLVRPPTGSQSVPA--TAPMETQNQDAARSPGEVPKDPGKMFVGGLSWQ 232
S+V P S + A T P + D + SP E D KMFVG + Q
Sbjct: 17 SVVVPIAESTVINAKDTTPSTAADNDVSPSPSEPDTDAIKMFVGQIPRQ 65
>EF523767-1|ABS18833.1| 193|Caenorhabditis elegans ELAV-type RNA
binding protein variantB protein.
Length = 193
Score = 26.6 bits (56), Expect = 2.3
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 92 SLVRPPTGSQSVPA--TAPMETQNQDAARSPGEVPKDPGKMFVGGLSWQ 232
S+V P S + A T P + D + SP E D KMFVG + Q
Sbjct: 17 SVVVPIAESTVINAKDTTPSTAADNDVSPSPSEPDTDAIKMFVGQIPRQ 65
>EF523766-1|ABS18832.1| 584|Caenorhabditis elegans ELAV-type RNA
binding protein variantA protein.
Length = 584
Score = 26.6 bits (56), Expect = 2.3
Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 92 SLVRPPTGSQSVPA--TAPMETQNQDAARSPGEVPKDPGKMFVGGLSWQ 232
S+V P S + A T P + D + SP E D KMFVG + Q
Sbjct: 17 SVVVPIAESTVINAKDTTPSTAADNDVSPSPSEPDTDAIKMFVGQIPRQ 65
>Z46787-10|CAA86749.1| 154|Caenorhabditis elegans Hypothetical
protein C16C10.11 protein.
Length = 154
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -2
Query: 221 VLRRTSSRGPWAPLRGYGPHPGFGSPWGLSPARFAS 114
V RRT+S P AP+R P P S + P R A+
Sbjct: 2 VRRRTASPSPSAPVRS-APRPAAQSSFAAPPPRPAA 36
>U88314-8|AAF99888.1| 249|Caenorhabditis elegans Pharyngeal gland
toxin-relatedprotein 2 protein.
Length = 249
Score = 25.8 bits (54), Expect = 4.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 171 VAPERCPRTPGRCSSEDS 224
V ++CP+T GRCSS S
Sbjct: 122 VMTQQCPKTCGRCSSFSS 139
>U88314-7|AAF99887.2| 294|Caenorhabditis elegans Pharyngeal gland
toxin-relatedprotein 1 protein.
Length = 294
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 171 VAPERCPRTPGRCSSEDSA 227
V ++CPRT GRC+S ++
Sbjct: 116 VMTQQCPRTCGRCNSTSTS 134
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 183 RCPRTPGRCSSEDS 224
+CPRT GRCS+ S
Sbjct: 170 QCPRTCGRCSTSSS 183
>U88314-6|AAF99886.1| 240|Caenorhabditis elegans Hypothetical
protein C46H11.7 protein.
Length = 240
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 171 VAPERCPRTPGRCSSEDS 224
V ++CPRT GRC+S +
Sbjct: 167 VMTQQCPRTCGRCNSSST 184
Score = 25.4 bits (53), Expect = 5.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 171 VAPERCPRTPGRCSS 215
V ++CPRT GRC+S
Sbjct: 117 VMTQQCPRTCGRCNS 131
>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of glp-1
protein.
Length = 1492
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/49 (28%), Positives = 19/49 (38%)
Frame = -2
Query: 188 APLRGYGPHPGFGSPWGLSPARFASRSAGALDYEIAMTRRGRLPESLGA 42
AP + P PG SPW +PA + Y + PE+ A
Sbjct: 1274 APQARFTPTPGAPSPWHATPAELKTPWNTTPQYHAPPGAQAAAPEAPAA 1322
>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
protein Y53H1C.2a protein.
Length = 1512
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/49 (28%), Positives = 19/49 (38%)
Frame = -2
Query: 188 APLRGYGPHPGFGSPWGLSPARFASRSAGALDYEIAMTRRGRLPESLGA 42
AP + P PG SPW +PA + Y + PE+ A
Sbjct: 1294 APQARFTPTPGAPSPWHATPAELKTPWNTTPQYHAPPGAQAAAPEAPAA 1342
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 25.4 bits (53), Expect = 5.4
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 68 PAASSLFRSLVRPPTGSQSVPATAPMETQNQDAARSPGEVPKDPGKMFVGGLS 226
P +S F L PTG Q PM +++A + GE PK+ K + +S
Sbjct: 184 PPPTSHFMVLADTPTGIQ------PMNPPGKESAGASGEPPKEEIKTEIESIS 230
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 25.4 bits (53), Expect = 5.4
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +2
Query: 68 PAASSLFRSLVRPPTGSQSVPATAPMETQNQDAARSPGEVPKDPGKMFVGGLS 226
P +S F L PTG Q PM +++A + GE PK+ K + +S
Sbjct: 184 PPPTSHFMVLADTPTGIQ------PMNPPGKESAGASGEPPKEEIKTEIESIS 230
>Z81587-6|CAB04704.1| 417|Caenorhabditis elegans Hypothetical
protein T06G6.8 protein.
Length = 417
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +2
Query: 68 PAASSLFRSLVRPPTGSQSVPATAPMETQNQDAARSPGEVPKDP 199
PA ++ F +P T + +P+TA + A P EV + P
Sbjct: 338 PATATPFDLPTKPSTSTTKLPSTASTTSAAPLAFTEPSEVAEAP 381
>Z68106-7|CAA92131.1| 72|Caenorhabditis elegans Hypothetical
protein F41E7.8 protein.
Length = 72
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -2
Query: 176 GYGPHPGFGSPWGLSP 129
GYGP P PWG P
Sbjct: 39 GYGPRPWGPRPWGPRP 54
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
on autosome protein2 protein.
Length = 1758
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = +2
Query: 71 AASSLFRSLVRPPTGSQSVPATAPMETQNQDAARSPGEVPKDP 199
AASS S P S PATAP T A+++P + P
Sbjct: 751 AASSSSNSAASRPPSQPSTPATAP-ATPMLQASQAPQPLQAPP 792
>U70846-2|ABI18146.1| 647|Caenorhabditis elegans Hypothetical
protein D1073.1b protein.
Length = 647
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +3
Query: 162 MRPVAPERCPR 194
MRP+ PERCP+
Sbjct: 508 MRPLKPERCPQ 518
>U70846-1|AAB09104.4| 510|Caenorhabditis elegans Hypothetical
protein D1073.1a protein.
Length = 510
Score = 24.6 bits (51), Expect = 9.5
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +3
Query: 162 MRPVAPERCPR 194
MRP+ PERCP+
Sbjct: 371 MRPLKPERCPQ 381
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 24.6 bits (51), Expect = 9.5
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = -1
Query: 141 GAVAGTLCEPVGGRTRLRNSDDAAGTAPGVTRRTTDPRRIPQP 13
G TL P GGR +R AGT PG R D R P P
Sbjct: 2163 GGYGSTLVMPRGGRV-VR----PAGTLPGGGRLYVDHNRHPYP 2200
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 24.6 bits (51), Expect = 9.5
Identities = 18/43 (41%), Positives = 19/43 (44%)
Frame = -1
Query: 141 GAVAGTLCEPVGGRTRLRNSDDAAGTAPGVTRRTTDPRRIPQP 13
G TL P GGR +R AGT PG R D R P P
Sbjct: 2163 GGYGSTLVMPRGGRV-VR----PAGTLPGGGRLYVDHNRHPYP 2200
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,393,537
Number of Sequences: 27780
Number of extensions: 100165
Number of successful extensions: 470
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 12,740,198
effective HSP length: 59
effective length of database: 11,101,178
effective search space used: 222023560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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