Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_D04
(418 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein S10|S... 113 8e-27
SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein S10|Schizosa... 109 1e-25
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 28 0.51
SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy... 26 2.0
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 26 2.0
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 26 2.0
SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz... 25 4.7
SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase ... 25 4.7
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 6.2
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 25 6.2
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 25 6.2
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz... 25 6.2
SPBC18E5.05c |||RNA polymerase II elongator complex subunit|Schi... 24 8.2
SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit Ss... 24 8.2
>SPBP22H7.08 |rps1002|rps10-2, rps10B|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 147
Score = 113 bits (273), Expect = 8e-27
Identities = 62/117 (52%), Positives = 75/117 (64%), Gaps = 1/117 (0%)
Frame = +1
Query: 13 IPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 192
+PNLQVIKA QSL SRGY+K ++ W FY+ LTNEG+EYLR +LHLP E+VPAT KR VR
Sbjct: 37 VPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVR 96
Query: 193 TETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKAD-VGPGSADVEFRGGFGR 360
R GRP+ R++ + YRRA +KK D PG FRGGFGR
Sbjct: 97 PAAPR---AGRPEPRERSSAADAGYRRA-------EKKDDGAAPGGFAPSFRGGFGR 143
>SPAC31G5.17c |rps1001|rps10-1|40S ribosomal protein
S10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 144
Score = 109 bits (263), Expect = 1e-25
Identities = 60/116 (51%), Positives = 71/116 (61%)
Frame = +1
Query: 13 IPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 192
+PNLQVIKA QSL SRGY+K ++ W FY+ LTNEG+EYLR +LHLP E+VPAT KR VR
Sbjct: 37 VPNLQVIKACQSLDSRGYLKTRYNWGWFYYTLTNEGVEYLREYLHLPAEVVPATHKRQVR 96
Query: 193 TETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGFGR 360
R GRP+ R + D + YRRA K P FRGGFGR
Sbjct: 97 PTAPR---AGRPEPRERASAD-AGYRRA------EKKDEGAAPSGFAPSFRGGFGR 142
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 28.3 bits (60), Expect = 0.51
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 215 QLAGLMLQHEQLKIDQLIGAHHQLELLMIRRLMS 316
Q AGL+ HE L+ ++ AH + LL +R+ ++
Sbjct: 758 QEAGLIAMHEDLEAKEICQAHFKTALLALRKAIT 791
>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 215
Score = 26.2 bits (55), Expect = 2.0
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = -3
Query: 365 RPLPKPPLNSTSAEPGPTSAFLSXXXXXXXXXXXADLSSAVRAGAS 228
+PLP PP NS+ P SA +++S V +G+S
Sbjct: 89 QPLPLPPRNSSLYARFPLSAGAGASSHSEETTPSHEVTSNVSSGSS 134
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1066
Score = 26.2 bits (55), Expect = 2.0
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = -1
Query: 307 PSYHEELQLVVRADKLIYLQLFVLEHQACQLHHDVLSLYALTSSGLLVQ-FQEVSAGKF* 131
PSY + + +K ++L L L H + +LSLY + + +V+ V F
Sbjct: 992 PSYFDVFFPSLGMEKRVHLDLLNLTHVRFEEDQGILSLYDESGAVTVVKLLTSVKVKLFV 1051
Query: 130 GIQYPHLLNTS 98
+ P L+N S
Sbjct: 1052 QLSTPPLINVS 1062
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 2.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 223 RPDAPARTAEDRSAYRRAPPAGAPH 297
+P P + + Y++APPAGAP+
Sbjct: 113 QPPQPVQPNPYGAPYQQAPPAGAPY 137
>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 504
Score = 25.0 bits (52), Expect = 4.7
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 121 IEYLRIFLHLPPEIVPATLKRSVRTETVRRGAVGR 225
IEYL + PP + P L + E + G +GR
Sbjct: 199 IEYLPSQNYTPPSLEPNKLDEGMFLEGIGAGGIGR 233
>SPAC644.05c |||deoxyuridine 5'-triphosphate nucleotidohydrolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 140
Score = 25.0 bits (52), Expect = 4.7
Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = +1
Query: 205 RRGAVGRPDAPARTAEDRSAYRR-APPAGAPHDKKADVGPGSADVEFRG 348
RRG V D A Y R AP +G D G G D ++RG
Sbjct: 37 RRGKV-LVDTDLAIAVPEGTYGRVAPRSGLASKHSIDTGAGVIDADYRG 84
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 24.6 bits (51), Expect = 6.2
Identities = 15/48 (31%), Positives = 16/48 (33%)
Frame = +1
Query: 151 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAP 294
PP P + S T A APA A AY AP P
Sbjct: 58 PPSGPPPSYSNSAAPATPAASASSAAPAPAPAASQNRAYGAAPQPYPP 105
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 24.6 bits (51), Expect = 6.2
Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Frame = +1
Query: 151 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPA-GAPHDKKADVGPGS 327
P P+ S R T V P +PAR SAY APPA G + G S
Sbjct: 281 PYASTPSAAVGSSRGSTPASATV--PISPARGFPTTSAYNPAPPAYGMANPAYGSTGIRS 338
Query: 328 ADVEFRG 348
+ + G
Sbjct: 339 SSIPSSG 345
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 24.6 bits (51), Expect = 6.2
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 154 PEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRS 261
P I P ++ V TVR G+ PD P+ + R+
Sbjct: 791 PFIQPPSMTNQVAYPTVRDGSNNSPDHPSSSNSKRT 826
>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 24.6 bits (51), Expect = 6.2
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = -3
Query: 362 PLPKPPLNSTSAEPGPTSAFLSXXXXXXXXXXXADLSSAVRAGASGLPTAPRRTVSVRTD 183
P+P P++ + A+P P S LS SAV +S +P A VS D
Sbjct: 315 PVPMSPISISPAKPSPQSPKLS--------------QSAVGHPSSSIPAAAMHKVSYSDD 360
Query: 182 LFR 174
L R
Sbjct: 361 LMR 363
>SPBC18E5.05c |||RNA polymerase II elongator complex
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 24.2 bits (50), Expect = 8.2
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = -2
Query: 102 PVKMPPCELFLNISS 58
P +PPCE+FL+ +S
Sbjct: 140 PSYLPPCEVFLDFTS 154
>SPCC1682.07 |ssl1||transcription factor TFIIH complex subunit
Ssl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 24.2 bits (50), Expect = 8.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -2
Query: 114 IC*IPVKMPPCELFLNISSRFK*LHSFDHL 25
+C +P++ P C L L +S+ S+ HL
Sbjct: 318 VCTLPIECPSCSLVLILSTHL--ARSYHHL 345
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,486,510
Number of Sequences: 5004
Number of extensions: 27028
Number of successful extensions: 119
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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