Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_D04
(418 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0270 - 42417782-42417850,42418207-42418342,42418826-424191... 112 9e-26
02_04_0177 + 20669053-20669055,20669150-20669198,20669680-206699... 110 5e-25
04_03_0970 + 21338072-21338074,21338192-21338240,21338688-213389... 108 2e-24
03_01_0474 + 3646724-3646789,3648952-3649067,3649547-3649595,364... 31 0.49
05_03_0634 + 16432679-16433076,16433358-16433610,16433993-164342... 30 0.86
02_05_0308 - 27754340-27754634,27755591-27755696,27755781-277558... 30 0.86
03_03_0217 + 15500943-15502196 29 1.1
03_06_0519 - 34481751-34482722 29 1.5
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634... 29 2.0
01_07_0081 - 40959279-40959375,40959463-40959589,40960138-409603... 29 2.0
04_03_0718 + 19005460-19005767,19005854-19006370 28 2.6
05_07_0310 + 29135875-29136052,29136206-29136617,29136723-291368... 28 3.5
04_04_0674 + 27173948-27174188,27174704-27175260,27175310-271753... 28 3.5
02_01_0462 + 3332464-3332470,3333606-3335806 28 3.5
01_01_0446 + 3321832-3322232,3322398-3322455,3322810-3323748,332... 28 3.5
06_03_0948 - 26252230-26252460,26252567-26252614,26252703-262530... 27 4.6
01_03_0106 - 12607995-12608327,12608863-12609063 27 4.6
01_01_0475 + 3500385-3500880,3501078-3501154,3501851-3502019,350... 27 4.6
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306... 27 6.0
05_06_0277 + 26885621-26886064,26886148-26886317,26887038-268879... 27 6.0
05_03_0373 - 13194723-13195847,13196219-13196809 27 6.0
04_01_0330 - 4369326-4370852 27 6.0
01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171... 27 6.0
>01_07_0270 -
42417782-42417850,42418207-42418342,42418826-42419108,
42419459-42419507,42419614-42419616
Length = 179
Score = 112 bits (270), Expect = 9e-26
Identities = 62/131 (47%), Positives = 82/131 (62%), Gaps = 13/131 (9%)
Frame = +1
Query: 10 EIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSV 189
++PNL+VIK MQS KS+ YV+E F+W+H+YWYLTN+GIE+LR +L+LP E+VP TLK+S
Sbjct: 36 DVPNLEVIKLMQSFKSKEYVRETFSWQHYYWYLTNDGIEHLRSYLNLPSEVVPNTLKKSA 95
Query: 190 R--TETVRRGAVG-RPDAPARTAEDRSAY-----RRAPPAGAPHDKKADVGPGSADVE-- 339
+ + G G RP P R DR + R P GAP D + G A+ +
Sbjct: 96 KPPSRPFGSGPPGDRPRGPPRFEGDRPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPS 155
Query: 340 FRG---GFGRG 363
FRG GFGRG
Sbjct: 156 FRGSRPGFGRG 166
>02_04_0177 +
20669053-20669055,20669150-20669198,20669680-20669962,
20670526-20670661,20671014-20671094
Length = 183
Score = 110 bits (264), Expect = 5e-25
Identities = 64/133 (48%), Positives = 81/133 (60%), Gaps = 15/133 (11%)
Frame = +1
Query: 10 EIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSV 189
++PNLQVIK MQS KS+ YV+E F+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S
Sbjct: 36 DVPNLQVIKLMQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSA 95
Query: 190 RT--ETVRRGAVG-RPDAPARTAEDRSAY-----RRAPPAGAPHDKKADVGPGSADVE-- 339
R G G RP P R DR + R P GAP D + G A+ +
Sbjct: 96 RPPGRPFGSGPPGDRPRGPPRFEGDRPRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQPS 155
Query: 340 FRG-----GFGRG 363
FR GFGRG
Sbjct: 156 FRSSGGRPGFGRG 168
>04_03_0970 +
21338072-21338074,21338192-21338240,21338688-21338970,
21339570-21339705,21339761-21339769
Length = 159
Score = 108 bits (259), Expect = 2e-24
Identities = 60/123 (48%), Positives = 76/123 (61%), Gaps = 8/123 (6%)
Frame = +1
Query: 10 EIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSV 189
++PNLQVIK MQS KS+ YV+E F+W+++YWYLTN+GIE+LR +L+LP EIVPATLK+S
Sbjct: 36 DVPNLQVIKLMQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSA 95
Query: 190 RT--ETVRRGAVG-RPDAPARTAEDRSAY-----RRAPPAGAPHDKKADVGPGSADVEFR 345
R G G RP P R DR + R P GAP D + G A EF+
Sbjct: 96 RPPGRPFGSGPPGDRPRGPPRFEGDRPRFGDRDGYRGGPRGAPGDFGGE--KGGAPAEFQ 153
Query: 346 GGF 354
F
Sbjct: 154 PSF 156
>03_01_0474 +
3646724-3646789,3648952-3649067,3649547-3649595,
3649641-3649697,3649743-3650993
Length = 512
Score = 30.7 bits (66), Expect = 0.49
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = -3
Query: 239 AGASGLPTAPRRTVSVRTDLFRVAGTISGGKCRKI 135
A A G P P + VR L+ T GG CR +
Sbjct: 3 AAAGGAPPRPAAGIRVRVPLYMTGQTYQGGSCRGV 37
>05_03_0634 +
16432679-16433076,16433358-16433610,16433993-16434291,
16434553-16434729,16435001-16435621,16435690-16435784,
16436000-16436088,16436185-16436250,16436475-16437026,
16437879-16437953,16438305-16438375,16438456-16438513,
16441506-16442048
Length = 1098
Score = 29.9 bits (64), Expect = 0.86
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Frame = +1
Query: 31 IKAMQSLKSRGYVKEQFAWRH---FYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVRTET 201
I + L S G WR F+ YLT E I YL +HL + +T RS+ +
Sbjct: 605 ISSNAQLDSPGSANSSPFWRQVEPFFSYLTTEDIAYLSQQIHLSDD---STASRSIEGDE 661
Query: 202 VR--RGA---VGRPDAPARTAED 255
R +G+ + +P PA + +D
Sbjct: 662 SRKYKGSLEYISQPSTPAGSNKD 684
>02_05_0308 -
27754340-27754634,27755591-27755696,27755781-27755855,
27756039-27757410
Length = 615
Score = 29.9 bits (64), Expect = 0.86
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Frame = -3
Query: 362 PLPKPPLNSTSAEPGP-----TSAFLSXXXXXXXXXXXADLSSAVRAGASGLPT 216
PLP+PP TSA P P + L+ LS+++ A A LPT
Sbjct: 3 PLPRPPPTPTSAAPAPCPRQIAAVVLNHPSSALTPASTRSLSASLLAVAPSLPT 56
>03_03_0217 + 15500943-15502196
Length = 417
Score = 29.5 bits (63), Expect = 1.1
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Frame = +1
Query: 163 VPATLKRSVRTETVRRGAVGRPDAPARTAEDR--SAYRRAPPAGAPHDK-----KADVGP 321
+P LKR + + R +V APA + R SA R A P + +A GP
Sbjct: 262 LPERLKREIEEAKLLRRSVSAVTAPAAASSGRWASAASRTMSAARPSRRWSALLRALSGP 321
Query: 322 GSADVEFRGGFGRGRSAP 375
+D++ GG GR R AP
Sbjct: 322 RYSDMDGGGGGGR-RVAP 338
>03_06_0519 - 34481751-34482722
Length = 323
Score = 29.1 bits (62), Expect = 1.5
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 205 RRGAVGRPDAPARTAEDRSAYRRAPP-AGAPHDKKADVGPGSAD 333
R+G G PA ++ + RR+ AGAP D A+ GP S +
Sbjct: 23 RKGKRGAEAPPATSSSTPTTARRSKRLAGAPPDHPAEAGPSSTN 66
>08_02_0824 +
21561699-21562415,21563294-21563362,21563424-21563459,
21564533-21564600,21565259-21565277,21565662-21565763,
21566173-21566288,21566501-21566595,21568093-21568264,
21568413-21568493,21569732-21569801,21570106-21570132
Length = 523
Score = 28.7 bits (61), Expect = 2.0
Identities = 19/73 (26%), Positives = 27/73 (36%)
Frame = +1
Query: 151 PPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSA 330
PPE L+ + RRG +P P A + + +PPA + +
Sbjct: 100 PPEAASEALRGAASPPERRRGGDRQPSHPTEAASEAPSGSASPPARRRGGDQQPPPAVAV 159
Query: 331 DVEFRGGFGRGRS 369
V GG G RS
Sbjct: 160 AVTSEGGVGPRRS 172
>01_07_0081 -
40959279-40959375,40959463-40959589,40960138-40960339,
40962414-40963361
Length = 457
Score = 28.7 bits (61), Expect = 2.0
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = -3
Query: 371 ADRPLPKPPLNSTSAEPGPTSAFLSXX-XXXXXXXXXADLSSAVRAGASGLPTA 213
+D P P PP+ T EP P S D SS+V + +S PTA
Sbjct: 19 SDDPPPPPPVTETKPEPEPPLPTTSIDPTPSGDEESGDDSSSSVSSASSTSPTA 72
Score = 26.6 bits (56), Expect = 8.0
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = -3
Query: 365 RPLPKPPLNSTSAEPGPTSAFLSXXXXXXXXXXXADLSSAVRAGAS 228
+P P+PPL +TS +P P+ S + S A A+
Sbjct: 32 KPEPEPPLPTTSIDPTPSGDEESGDDSSSSVSSASSTSPTAAAAAA 77
>04_03_0718 + 19005460-19005767,19005854-19006370
Length = 274
Score = 28.3 bits (60), Expect = 2.6
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
Frame = +1
Query: 70 KEQFAWRHFYWYLTNEGIEYL--RIFLHLPPEIVPATLKRSVRTETVRRGAVGRPDAPAR 243
+E AW F YL + Y + + L P+ +P + ++ R R + A
Sbjct: 201 QEAVAWMWFGRYLAVANLVYFSTNLLVFLIPKFLPRSFEKYFRM---------RDEVYAE 251
Query: 244 TAEDRSAYRRAPPAGAPHDKKAD 312
TAEDR A A KKAD
Sbjct: 252 TAEDRHAAAATVAAKPVESKKAD 274
>05_07_0310 +
29135875-29136052,29136206-29136617,29136723-29136867,
29137944-29138102,29138183-29138242,29138349-29138546
Length = 383
Score = 27.9 bits (59), Expect = 3.5
Identities = 17/44 (38%), Positives = 18/44 (40%)
Frame = +1
Query: 235 PARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGFGRGR 366
P + A A R A GAP D GPG RGG G R
Sbjct: 50 PTKPAPPAQAVREARNYGAPRDGAGRGGPGRGRGGGRGGRGGPR 93
>04_04_0674 +
27173948-27174188,27174704-27175260,27175310-27175399,
27175475-27175714,27175801-27176022,27176124-27176433,
27176528-27176847,27176906-27177021,27177133-27177227,
27177331-27177407,27177520-27177615
Length = 787
Score = 27.9 bits (59), Expect = 3.5
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +1
Query: 148 LPPEIVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPA 285
LPP + LKR V RR + PD R +Y R PPA
Sbjct: 510 LPPPVRSRPLKRPVDIRD-RRPVMSIPDRVRRLPPPERSYDRRPPA 554
>02_01_0462 + 3332464-3332470,3333606-3335806
Length = 735
Score = 27.9 bits (59), Expect = 3.5
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 32 SKLCNHLNLE--DMLRNSSHGGIFTGI*QMRVLNTLEFSCTYLL 157
S+L N L+ +M RN +GGI I + V+ +L+ SC LL
Sbjct: 567 SELTNLRGLQFLNMSRNVLYGGIPNDIGHLHVVESLDLSCNRLL 610
>01_01_0446 +
3321832-3322232,3322398-3322455,3322810-3323748,
3324504-3324654,3324740-3324818,3325826-3325934
Length = 578
Score = 27.9 bits (59), Expect = 3.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 274 APPAGAPHDKKADVGPGSADVEFRGGFGRGRSAP 375
APP P+ A G GS + GG+G GR P
Sbjct: 356 APPPNPPYSGGAPGGQGSLPPSYDGGYG-GRPMP 388
>06_03_0948 -
26252230-26252460,26252567-26252614,26252703-26253041,
26253132-26253260,26255404-26255967
Length = 436
Score = 27.5 bits (58), Expect = 4.6
Identities = 17/55 (30%), Positives = 30/55 (54%)
Frame = +2
Query: 203 YVVVQLAGLMLQHEQLKIDQLIGAHHQLELLMIRRLMSALVQLMLNLEEVSEEVD 367
++ Q A L ++ L +D+L L L +RRL S LV L +++V +E++
Sbjct: 184 FLDAQAAELEIEAYPL-LDELTSKISTLNLERVRRLKSRLVALTRRVQKVRDEIE 237
>01_03_0106 - 12607995-12608327,12608863-12609063
Length = 177
Score = 27.5 bits (58), Expect = 4.6
Identities = 18/34 (52%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 271 RAPPAGAPHDKKADVGPGS--ADVEFRGGFGRGR 366
R PP A D AD G GS AD + GG GRGR
Sbjct: 141 RQPPCSA--DADADEGGGSVDADEDGDGGRGRGR 172
>01_01_0475 +
3500385-3500880,3501078-3501154,3501851-3502019,
3502385-3502473,3502601-3502765,3502841-3502918,
3503087-3503190,3503317-3503422
Length = 427
Score = 27.5 bits (58), Expect = 4.6
Identities = 18/60 (30%), Positives = 21/60 (35%)
Frame = +1
Query: 166 PATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFR 345
PA + R V A AP + S RA P G PH G G +V R
Sbjct: 19 PAAAAAAGRRYGVHFSASSFIQAPLSALLEYSGILRADPGGGPHQVGGGGGGGGGEVSIR 78
>06_02_0046 +
10928708-10928798,10929997-10930077,10930567-10930685,
10931275-10931894,10931992-10933184,10933280-10933359,
10933751-10933846,10933931-10934004,10936007-10936151,
10936323-10936487
Length = 887
Score = 27.1 bits (57), Expect = 6.0
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 221 AGLMLQHEQLKIDQLIGAHHQLELLMIRRLMSALVQLMLNLEEVSEEVDL 370
AG + HE + ID L A + ELL + + L + N+E + E+++
Sbjct: 272 AGAVTSHESMDIDPLQLARYGEELLQRLKPLERLHGSIYNVELLKREIEI 321
>05_06_0277 +
26885621-26886064,26886148-26886317,26887038-26887941,
26888544-26888575,26888862-26888928,26889116-26889173,
26889329-26889421,26890366-26890480,26890847-26890894,
26891012-26891057,26891161-26891231,26891865-26891870,
26891991-26892038,26892439-26892488,26892892-26893154
Length = 804
Score = 27.1 bits (57), Expect = 6.0
Identities = 20/48 (41%), Positives = 23/48 (47%)
Frame = +1
Query: 178 KRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGP 321
+R + T R GAV P PA D A +R PAG D A VGP
Sbjct: 74 RRKLPLATGRDGAVAGP--PADPVPD--ARQRRVPAGGGADPAAGVGP 117
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 27.1 bits (57), Expect = 6.0
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 160 IVPATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGA 291
++ + + E +RR + GR +R A++ RRA PAGA
Sbjct: 43 LISGAVSAAEPNERIRRSS-GRYIVASRRADEEDGLRRAVPAGA 85
>04_01_0330 - 4369326-4370852
Length = 508
Score = 27.1 bits (57), Expect = 6.0
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 268 RRAPPAGAPHDKKADVGPGSADVEFRGGFG 357
RR P G HD D G+AD + GG G
Sbjct: 446 RRTPSYGHDHDDDDDNYDGNADADDNGGGG 475
>01_06_1249 -
35714645-35716003,35716700-35716761,35717007-35717181,
35717276-35717301,35717917-35717983,35719803-35719945,
35720337-35720349
Length = 614
Score = 27.1 bits (57), Expect = 6.0
Identities = 15/31 (48%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +1
Query: 211 GAVGRPDAPARTAEDRSAYRRAPP-AGAPHD 300
G GR R A D A RR P GAPHD
Sbjct: 105 GEAGRAGLRRRQAVDEVAARREEPQGGAPHD 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,158,720
Number of Sequences: 37544
Number of extensions: 196738
Number of successful extensions: 976
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 975
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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