Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_D04
(418 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal pr... 104 2e-23
Z81092-1|CAB03144.1| 143|Caenorhabditis elegans Hypothetical pr... 28 3.1
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 27 4.1
Z93389-2|CAB07671.2| 355|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z93374-6|CAB07559.1| 108|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical p... 27 7.2
Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z75552-2|CAA99944.1| 894|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z75552-1|CAA99941.1| 920|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z70271-3|CAA94234.1| 358|Caenorhabditis elegans Hypothetical pr... 27 7.2
U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical pr... 27 7.2
AF016664-1|AAB66070.2| 324|Caenorhabditis elegans Serpentine re... 27 7.2
Z96047-6|CAB09416.1| 922|Caenorhabditis elegans Hypothetical pr... 26 9.5
U55857-11|AAA98036.1| 153|Caenorhabditis elegans Hypothetical p... 26 9.5
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 26 9.5
DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related ... 26 9.5
DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related ... 26 9.5
AF088288-1|AAC98295.1| 826|Caenorhabditis elegans caspase-relat... 26 9.5
AF045646-5|AAK29828.1| 225|Caenorhabditis elegans Hypothetical ... 26 9.5
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 26 9.5
AF024614-1|AAB97161.1| 922|Caenorhabditis elegans ADAM 10 protein. 26 9.5
AC084197-7|AAM44398.1| 826|Caenorhabditis elegans Caspase prote... 26 9.5
AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeti... 26 9.5
AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeti... 26 9.5
>AF003151-12|AAK18912.1| 149|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 10 protein.
Length = 149
Score = 104 bits (250), Expect = 2e-23
Identities = 60/121 (49%), Positives = 71/121 (58%)
Frame = +1
Query: 13 IPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 192
+ NL+VIK ++SL SR VKEQFAWRH+YWYLT+ GI YLR +L LP EIVPAT+K R
Sbjct: 38 VSNLEVIKTLKSLASRELVKEQFAWRHYYWYLTDAGILYLREYLALPAEIVPATIKTKPR 97
Query: 193 TETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGFGRGRSA 372
V P A DR AYR +K + GPG A V +R GFGRG
Sbjct: 98 EIRVPH-EDRAPRAAQGEKGDREAYRT--------EKVTEAGPGGAPV-YRAGFGRGAPP 147
Query: 373 P 375
P
Sbjct: 148 P 148
>Z81092-1|CAB03144.1| 143|Caenorhabditis elegans Hypothetical
protein F58D12.1 protein.
Length = 143
Score = 27.9 bits (59), Expect = 3.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 371 ADRPLPKPPLNSTSAEPGPTSA 306
+DRP P+PP +S S+ P P SA
Sbjct: 45 SDRP-PRPPSSSASSSPAPGSA 65
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/49 (34%), Positives = 19/49 (38%)
Frame = +1
Query: 211 GAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGFG 357
G VG P AP + + A A P G P A PG A G G
Sbjct: 259 GNVGAPGAPGQVVDVPGAPGPAGPPGPPGPSGAPGHPGQAGSSLPGAPG 307
>Z93389-2|CAB07671.2| 355|Caenorhabditis elegans Hypothetical
protein T13F3.3 protein.
Length = 355
Score = 26.6 bits (56), Expect = 7.2
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 161 ISGGKCRKILRYSIPSFVKYQ*KCLHANCSLTYPLDLSDC 42
+S G C R S+ S +KYQ K C + Y LD C
Sbjct: 28 LSCGACASFFRRSVVSKIKYQCKDGKKRCQIRY-LDRHFC 66
>Z93374-6|CAB07559.1| 108|Caenorhabditis elegans Hypothetical
protein C06C6.8 protein.
Length = 108
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 190 RTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADV 315
R + V R A RPD T+ + PPA P ++ +V
Sbjct: 39 RVDLVPRNAPVRPDPVKETSAQTCPTAQTPPAKTPMERSGNV 80
>Z81494-10|CAN86581.1| 1507|Caenorhabditis elegans Hypothetical
protein F02E9.4b protein.
Length = 1507
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 340 IQHQLNQGRHQPSYHEELQLVVRADKLIYLQLFVLEHQACQ 218
IQ +Q +HQ ++L+L +R + I ++ ++HQ Q
Sbjct: 34 IQQSQHQQQHQNQQQQQLELQIRDQERILIEQQRMQHQQQQ 74
>Z81494-9|CAB04052.2| 1505|Caenorhabditis elegans Hypothetical
protein F02E9.4a protein.
Length = 1505
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = -1
Query: 340 IQHQLNQGRHQPSYHEELQLVVRADKLIYLQLFVLEHQACQ 218
IQ +Q +HQ ++L+L +R + I ++ ++HQ Q
Sbjct: 34 IQQSQHQQQHQNQQQQQLELQIRDQERILIEQQRMQHQQQQ 74
>Z75552-2|CAA99944.1| 894|Caenorhabditis elegans Hypothetical
protein W04D2.1b protein.
Length = 894
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 218 LAGLMLQHEQLKIDQLIGAHHQLE 289
LA L++ HE +I++L+ AH Q +
Sbjct: 537 LADLVIVHEMREIEELVNAHDQFK 560
>Z75552-1|CAA99941.1| 920|Caenorhabditis elegans Hypothetical
protein W04D2.1a protein.
Length = 920
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +2
Query: 218 LAGLMLQHEQLKIDQLIGAHHQLE 289
LA L++ HE +I++L+ AH Q +
Sbjct: 563 LADLVIVHEMREIEELVNAHDQFK 586
>Z70271-3|CAA94234.1| 358|Caenorhabditis elegans Hypothetical
protein W08D2.6 protein.
Length = 358
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = +1
Query: 211 GAVGRPDAPARTAEDRSAYRRAPP 282
G+V R PAR A D Y+ APP
Sbjct: 76 GSVFRARRPARGAYDEGDYKEAPP 99
>U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical
protein ZK84.1 protein.
Length = 801
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/56 (25%), Positives = 25/56 (44%)
Frame = +1
Query: 166 PATLKRSVRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSAD 333
PA + + + + A G D P+ A + +A AP D A +GP +++
Sbjct: 451 PADVATTAPETSSAQSAAGSYDVPSEPASEVTAPIVESATEAPSDSAAPIGPAASE 506
>AF016664-1|AAB66070.2| 324|Caenorhabditis elegans Serpentine
receptor, class i protein77 protein.
Length = 324
Score = 26.6 bits (56), Expect = 7.2
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +1
Query: 16 PNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPP--EIVPATLKRS 186
P +QV+ + + ++ E F W+ T+ I + +F+ PP +I+ LK++
Sbjct: 257 PMIQVLILVFEIPQMNFISELI----FAWFATHSSINMVSLFIFFPPYRKIIAKGLKKT 311
>Z96047-6|CAB09416.1| 922|Caenorhabditis elegans Hypothetical
protein DY3.7 protein.
Length = 922
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 235 PARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEF 342
PAR ++ A+ G+PHD A+ PG D F
Sbjct: 416 PARVSQLTLAHEIGHNFGSPHDFPAECQPGLPDGNF 451
>U55857-11|AAA98036.1| 153|Caenorhabditis elegans Hypothetical
protein K08D10.11 protein.
Length = 153
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 371 ADRPLPKPPLNSTSAEPGPTSA 306
+DRP P+PP S S+ P P SA
Sbjct: 45 SDRP-PRPPSLSASSSPAPGSA 65
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/49 (34%), Positives = 18/49 (36%)
Frame = +1
Query: 211 GAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGFG 357
GA G P AP + E A AG P PGSA G G
Sbjct: 216 GAPGNPGAPGQVTETPGTPGPAGAAGPPGPPGPAGNPGSAGASEPGPAG 264
>DQ178246-1|ABA18185.1| 482|Caenorhabditis elegans TPX2-related
alternative variant b protein.
Length = 482
Score = 26.2 bits (55), Expect = 9.5
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +1
Query: 148 LPPEIVP-ATLKRS-VRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAG--APHDKKADV 315
L P+I P AT RS + V + V P APA ++++A R A PAG A + + V
Sbjct: 323 LTPKIRPIATANRSSILRMNVVKPTVPAP-APADAQQNKAASRPAVPAGGAARNRQPLRV 381
Query: 316 GPGS 327
PG+
Sbjct: 382 NPGT 385
>DQ178245-1|ABA18184.1| 507|Caenorhabditis elegans TPX2-related
alternative variant a protein.
Length = 507
Score = 26.2 bits (55), Expect = 9.5
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +1
Query: 148 LPPEIVP-ATLKRS-VRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAG--APHDKKADV 315
L P+I P AT RS + V + V P APA ++++A R A PAG A + + V
Sbjct: 323 LTPKIRPIATANRSSILRMNVVKPTVPAP-APADAQQNKAASRPAVPAGGAARNRQPLRV 381
Query: 316 GPGS 327
PG+
Sbjct: 382 NPGT 385
>AF088288-1|AAC98295.1| 826|Caenorhabditis elegans caspase-related
protein 2A protein.
Length = 826
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/58 (27%), Positives = 23/58 (39%)
Frame = -3
Query: 368 DRPLPKPPLNSTSAEPGPTSAFLSXXXXXXXXXXXADLSSAVRAGASGLPTAPRRTVS 195
D P P+ P + A+PGPT++ S A +A + P P T S
Sbjct: 478 DVPAPQSPPTPSPADPGPTTSSSSLTQDPASNATGFSDVPAPQAPPTPSPADPGPTTS 535
>AF045646-5|AAK29828.1| 225|Caenorhabditis elegans Hypothetical
protein F56B3.3 protein.
Length = 225
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 371 ADRPLPKPPLNSTSAEPGPTSA 306
+DRP P+PP S S+ P P SA
Sbjct: 45 SDRP-PRPPSLSASSSPAPGSA 65
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/49 (34%), Positives = 18/49 (36%)
Frame = +1
Query: 211 GAVGRPDAPARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEFRGGFG 357
GA G P AP + E A AG P PGSA G G
Sbjct: 226 GAPGNPGAPGQVTETPGTPGPAGAAGPPGPPGPAGNPGSAGASEPGPAG 274
>AF024614-1|AAB97161.1| 922|Caenorhabditis elegans ADAM 10 protein.
Length = 922
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 235 PARTAEDRSAYRRAPPAGAPHDKKADVGPGSADVEF 342
PAR ++ A+ G+PHD A+ PG D F
Sbjct: 416 PARVSQLTLAHEIGHNFGSPHDFPAECQPGLPDGNF 451
>AC084197-7|AAM44398.1| 826|Caenorhabditis elegans Caspase protein
2 protein.
Length = 826
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/58 (27%), Positives = 23/58 (39%)
Frame = -3
Query: 368 DRPLPKPPLNSTSAEPGPTSAFLSXXXXXXXXXXXADLSSAVRAGASGLPTAPRRTVS 195
D P P+ P + A+PGPT++ S A +A + P P T S
Sbjct: 478 DVPAPQSPPTPSPADPGPTTSSSSLTQDPASNATGFSDVPAPQAPPTPSPADPGPTTS 535
>AC025716-4|AAL32238.1| 482|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform b
protein.
Length = 482
Score = 26.2 bits (55), Expect = 9.5
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +1
Query: 148 LPPEIVP-ATLKRS-VRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAG--APHDKKADV 315
L P+I P AT RS + V + V P APA ++++A R A PAG A + + V
Sbjct: 323 LTPKIRPIATANRSSILRMNVVKPTVPAP-APADAQQNKAASRPAVPAGGAARNRQPLRV 381
Query: 316 GPGS 327
PG+
Sbjct: 382 NPGT 385
>AC025716-2|AAK39617.1| 507|Caenorhabditis elegans Tpx2 (targeting
protein for xenopusklp2)-like protein 1, isoform a
protein.
Length = 507
Score = 26.2 bits (55), Expect = 9.5
Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +1
Query: 148 LPPEIVP-ATLKRS-VRTETVRRGAVGRPDAPARTAEDRSAYRRAPPAG--APHDKKADV 315
L P+I P AT RS + V + V P APA ++++A R A PAG A + + V
Sbjct: 323 LTPKIRPIATANRSSILRMNVVKPTVPAP-APADAQQNKAASRPAVPAGGAARNRQPLRV 381
Query: 316 GPGS 327
PG+
Sbjct: 382 NPGT 385
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,406,782
Number of Sequences: 27780
Number of extensions: 163837
Number of successful extensions: 672
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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