Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_D02
(423 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 222 2e-59
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 123 1e-29
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 100 8e-23
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 72 3e-14
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 63 1e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 61 6e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 56 3e-09
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.074
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 27 0.91
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 0.91
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 26 2.8
SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomy... 25 3.7
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|... 25 4.8
SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr 1|||... 25 4.8
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 4.8
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.4
SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces p... 22 8.2
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 24 8.5
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 8.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 222 bits (543), Expect = 2e-59
Identities = 98/105 (93%), Positives = 102/105 (97%)
Frame = +2
Query: 107 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 286
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 287 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 421
RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLT
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLT 106
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 123 bits (297), Expect = 1e-29
Identities = 54/100 (54%), Positives = 73/100 (73%), Gaps = 1/100 (1%)
Frame = +2
Query: 125 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 304
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 305 KYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLT 421
+ PIE GI+ NW DME+IW + + + +L PEEHP+LLT
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLT 111
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 100 bits (240), Expect = 8e-23
Identities = 46/105 (43%), Positives = 72/105 (68%), Gaps = 2/105 (1%)
Frame = +2
Query: 113 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSK 286
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 287 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 421
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLT
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLT 106
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 72.1 bits (169), Expect = 3e-14
Identities = 43/123 (34%), Positives = 62/123 (50%), Gaps = 24/123 (19%)
Frame = +2
Query: 125 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 253
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 254 ------DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 412
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 413 LLT 421
LLT
Sbjct: 127 LLT 129
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 63.3 bits (147), Expect = 1e-11
Identities = 35/104 (33%), Positives = 56/104 (53%)
Frame = +2
Query: 110 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 289
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 290 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 421
G + +K I +G V NWD +W + +L+ P EHP+L+T
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILIT 104
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 61.3 bits (142), Expect = 6e-11
Identities = 32/100 (32%), Positives = 59/100 (59%), Gaps = 1/100 (1%)
Frame = +2
Query: 125 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 304
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGNDTLIEVGSRSI 82
Query: 305 -KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 421
+ P E +++NWD ME++ +TF +L + EHP+ +T
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMT 121
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 55.6 bits (128), Expect = 3e-09
Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 2/106 (1%)
Frame = +2
Query: 110 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 289
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 290 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 421
I + +K +GI+ +W+ W +L+V P E+ +++T
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMIT 107
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.074
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +2
Query: 170 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 313
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 27.5 bits (58), Expect = 0.91
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Frame = +2
Query: 125 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 304
+V+DNG+ KAGFAG P+ + R + G + ++G+E + TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 305 KYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLT 421
++ H G + +W +W N + P ++ +LLT
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLT 100
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 27.5 bits (58), Expect = 0.91
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -1
Query: 267 PT*ESF*PM-PTMTPW*RGRPTIEGNTARGASSPAKPALHIPDPLSTTNAATSSS 106
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 25.8 bits (54), Expect = 2.8
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = +2
Query: 311 PIEHGIVTNWDDMEKIWHHTF 373
PI+ G V +W+ ++ W H +
Sbjct: 113 PIQRGRVVDWEALKAFWKHLY 133
>SPAC4G8.09 |||mitochondrial leucine-tRNA ligase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 874
Score = 25.4 bits (53), Expect = 3.7
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +3
Query: 117 LPRWS*TMGPECAKPVSRETTLPAPYFPRSW 209
L W T P+C P +RET + SW
Sbjct: 481 LETWMKTTCPKCHGPATRETDTMDTFVDSSW 511
>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 712
Score = 25.0 bits (52), Expect = 4.8
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +1
Query: 292 YPHTQIPHRTRHRHQLGRYGEDLASHLLQ*AACSSRG 402
Y + + PH+ +H LG YG ++ L C +G
Sbjct: 307 YGNPEHPHQRKHAFDLGEYGAGYLTNPLA-LGCDCKG 342
>SPAC16C9.03 |||export adaptor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 498
Score = 25.0 bits (52), Expect = 4.8
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = -2
Query: 407 GAPRELHAAHCRRCDARSSP 348
G PRE HCR C+ P
Sbjct: 52 GIPRESTVNHCRECERYMQP 71
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 4.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 230 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 316
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 6.4
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +2
Query: 137 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 289
N +GM + R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPBC725.05c |||nucleotide pyrophosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 485
Score = 21.8 bits (44), Expect(2) = 8.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 293 ILTLKYPIEHGIVTN 337
I+T YP HGIV+N
Sbjct: 125 IVTGLYPESHGIVSN 139
Score = 20.6 bits (41), Expect(2) = 8.2
Identities = 10/26 (38%), Positives = 12/26 (46%)
Frame = +2
Query: 332 TNWDDMEKIWHHTFYNELRVAPEEHP 409
T WD E IW + N +R A P
Sbjct: 162 TWWDKGEPIWVNAERNNVRSAVHMWP 187
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 24.2 bits (50), Expect = 8.5
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -3
Query: 157 FAHSGPIVYDQRGNFLV 107
+ HS PI+YD+ G+ +V
Sbjct: 162 YTHSQPILYDRDGSLIV 178
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 8.5
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 213 RPTIEGNTARGASSPAKPALHIPDPLSTTNAATS 112
RP+ +G A G A P+ IP PL +N +S
Sbjct: 950 RPSNDGRKASGPRPAAPPS--IPPPLPVSNILSS 981
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,732,893
Number of Sequences: 5004
Number of extensions: 35139
Number of successful extensions: 103
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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