Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_D01
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    36   0.003
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    27   1.8  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   3.2  
SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   3.2  
SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces p...    26   3.2  
SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyce...    25   4.2  
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz...    25   5.6  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    25   7.3  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    25   7.3  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   7.3  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    24   9.7  

>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 35.9 bits (79), Expect = 0.003
 Identities = 18/46 (39%), Positives = 25/46 (54%)
 Frame = +2

Query: 188 PEIKPKTPFGQMPLLEIDGKQYAQSIAISRYLGRKYGLAGADLEED 325
           P     +P G+ P++  DG  Y +S AI  +L RKYG +    EED
Sbjct: 40  PAYTKLSPLGKSPIVVDDGVTYIESAAILEHLVRKYGPSFKPSEED 85


>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +2

Query: 269 ISRYLGRKYGLAGADLEEDFEIDQNVEFLNDIRANAAAVHYEKDEAVKAKKLA 427
           + + +G    + G DL E +EI++ V+F+     N+ A+ +  +    + K+A
Sbjct: 19  LEKEIGETVKIEG-DLVEVYEINRTVDFIKSGNYNSVALQFPDEHLADSGKVA 70


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
           Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = +2

Query: 134 LAYGGQEFEDKRISMDQWPEIKPKTPFGQMPLLEIDGKQYAQSIAISRYLGRK 292
           L Y   E++ +  S   + +I    P G +P L +DG  Y   + I+ Y+ R+
Sbjct: 672 LVYPYDEYQLEASS--HFSQISNTEPMGCLPELGLDGYGYKLFVPINEYIPRR 722


>SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 191 EIKPKTPFGQMPLLEIDGK 247
           E+K ++P GQ P LE DG+
Sbjct: 11  ELKDESPIGQSPHLENDGR 29


>SPAC13C5.04 |||glutamine amidotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 248

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
 Frame = -3

Query: 448 VFGLAEFCQFLGFH--RLVFLVMDGGGVCTNIVKEL-HVLINLEVFL*VCTSEAVLATEV 278
           + G  E C+F  F+  R            T +V  +  VL   EVF      EA+  +E 
Sbjct: 172 LLGSTEDCEFQIFYKPRQALTFQGHPEFSTEVVNTMVKVLRGTEVFTEQQKEEALKRSEN 231

Query: 277 PADGDALSV 251
           PAD D L+V
Sbjct: 232 PADNDFLAV 240


>SPBC1921.02 |rad60||DNA repair protein Rad60 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 406

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 302 AGADLEEDFEIDQNVEFLNDIRANAAAVHYEKDEA 406
           + +D EE+ E+D N + L  I A     H E   A
Sbjct: 30  SSSDSEEESELDTNKQALEHINAQKNITHNENKSA 64


>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 19/77 (24%), Positives = 37/77 (48%)
 Frame = +3

Query: 225 RCWKLTVNSTLRASPSAGTSVASTASLVQT*RKTSRLIRTWSSLTIFVQTPPPSITRKTR 404
           RC +  +  TLR   ++G S  +  S+     ++S +I    S T  + + P S+    R
Sbjct: 391 RCLEEDIEPTLRLDHASGLSWLTRRSVFTAILESSLIINPLHS-TSLLSSQPCSLCGFNR 449

Query: 405 R*KPRNWQNSARPNTSS 455
               R ++  +RP+++S
Sbjct: 450 TQPLRQFEFRSRPDSTS 466


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 155  IPARRRLATSADPRRAPSRGNSKKLRSALLVFMKLSSNI 39
            + A R+  ++A+   +  + N+K  R ALL+  K   NI
Sbjct: 1042 VTASRKAVSAAEKDLSNDQSNNKSSRKALLITFKGVKNI 1080


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -1

Query: 165 LSSNSCPP*ASNIRGPSPSAFTGK**KTTFGIVSFYEVIFKYLKYKSSPTTLP 7
           + S SCPP   N    SP +  G       G+VS  ++I   + Y     TLP
Sbjct: 325 VQSPSCPPSPKNNAHLSPGSMGGVKVNQLLGVVSLTDII--SVLYAHMKGTLP 375


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -2

Query: 146 RRRLATSADPRRAPSRGNSKKLRSALLVFMKLSSN 42
           R   +  +DP+++  R +SKKL ++ +V    SS+
Sbjct: 865 RTSASNESDPKKSTQRDSSKKLENSTVVSGSPSSS 899


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 360 IFVQTPPPSITRKTRR*KPRNWQNSARPNTSS 455
           +F+   PP    KT++ K  +++ S RP T++
Sbjct: 516 VFIWDLPPQHMHKTKKKKHEHFKASVRPITAA 547


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,817,922
Number of Sequences: 5004
Number of extensions: 36100
Number of successful extensions: 101
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)