Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_D01
         (459 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    23   1.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   6.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.5  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   8.5  

>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 188 PEIKPKTPFGQMPLLEIDGK 247
           P  KP+TPF    LL ++ K
Sbjct: 8   PNRKPRTPFTTQQLLSLEKK 27


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 6.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 296 GLAGADLEEDFEIDQNVEFLNDIRANAAA 382
           GL   D  +++   + V+FLND+ A   A
Sbjct: 174 GLHDLDQSQEYVRSKLVDFLNDLVAIGVA 202


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 206 SWA*FQAIGPLICV 165
           SWA F+A+  ++C+
Sbjct: 327 SWALFKAMSHMLCI 340


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 206 SWA*FQAIGPLICV 165
           SWA F+A+  ++C+
Sbjct: 295 SWALFKAMSHMLCI 308


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +1

Query: 16  RWRAFVFQIFEDN 54
           RW AFV  +F+++
Sbjct: 403 RWHAFVDDVFQEH 415


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,623
Number of Sequences: 438
Number of extensions: 2536
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)