Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_C24
         (425 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0106 - 13460882-13462086,13463452-13463629                       28   3.6  
01_06_0373 - 28841462-28842850                                         28   3.6  
01_05_0416 + 21956050-21956512,21958001-21958065,21958772-219589...    28   3.6  
01_06_0034 + 25769436-25769701,25769749-25769887                       27   4.8  
07_01_0021 - 133549-133628,133780-133824,133850-133858,134513-13...    27   6.3  
06_03_0400 - 20420257-20421837                                         27   8.3  

>07_03_0106 - 13460882-13462086,13463452-13463629
          Length = 460

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 132 HQLWVVQSPPADRAVRLSREPLEPGPPIQR 43
           H+L V+   PA R  R +  PL P P   R
Sbjct: 127 HRLRVIDGDPAPRLARTTAAPLSPDPAFLR 156


>01_06_0373 - 28841462-28842850
          Length = 462

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 126 LWVVQSPPADRAVRLSREPLEP 61
           LWVV+SPP+D   +   +P EP
Sbjct: 286 LWVVRSPPSDDPAKKFDKPPEP 307


>01_05_0416 +
           21956050-21956512,21958001-21958065,21958772-21958933,
           21959006-21959107
          Length = 263

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 22/76 (28%), Positives = 35/76 (46%)
 Frame = -3

Query: 237 RELAQVLQQNNSNRCCRLHRSQCPSRRGMKSGIEYHQLWVVQSPPADRAVRLSREPLEPG 58
           ++L   L     +R  + HRS+  ++ G  S   +  L   +SP   R    SR    P 
Sbjct: 2   QQLRLRLNTKAQHRRGKTHRSKLGTKIGPHSHRAHEALARHKSPDFRRTGPPSRTNTSPQ 61

Query: 57  PPIQRESTGNAYRRPS 10
           PP  ++ST  + RRP+
Sbjct: 62  PP--KDSTARSGRRPT 75


>01_06_0034 + 25769436-25769701,25769749-25769887
          Length = 134

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = -3

Query: 87  RLSREPLEPGPPIQRESTGNAYRRPSCRM 1
           RL  EPL P P  Q E  G A +R   R+
Sbjct: 64  RLDAEPLSPPPSRQHEHQGEASQRQRARI 92


>07_01_0021 -
           133549-133628,133780-133824,133850-133858,134513-134656,
           140098-140391,141324-141908,142034-142198,142364-142406
          Length = 454

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 397 CHLLIVINECCESRTAENIV 338
           CH +  +NECC SRT +N +
Sbjct: 189 CHKIDPVNECC-SRTCQNAI 207


>06_03_0400 - 20420257-20421837
          Length = 526

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 168 PSRRGMKSGIEYHQLWVVQSPPADRAVRLSRE 73
           P R+GM   I+Y   W  +  PA+  ++  R+
Sbjct: 414 PHRKGMLYNIQYITFWFGEGAPAEAPIKWIRD 445


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,102,455
Number of Sequences: 37544
Number of extensions: 178112
Number of successful extensions: 455
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)