Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_C21
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual     25   4.3  
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    25   4.3  

>SPCC757.02c |||epimarase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 405

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 76  RFILRRQSMRADYSVVQTTLWCRLLCGAGYSVVQTTLWCRLLCGADY 216
           R I  R+ + A    V T  +C  L G  Y+V+ +    R L   DY
Sbjct: 336 RTIAEREKLNAHALEVGTWAFCDFLFGRTYNVISSMSKARKLGYTDY 382


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 21/83 (25%), Positives = 37/83 (44%)
 Frame = +1

Query: 16  KHVPSNEKSIKECCNGDCEMRFILRRQSMRADYSVVQTTLWCRLLCGAGYSVVQTTLWCR 195
           KHV  +E   +   + D ++  +  +   + ++S   T  +   + G  ++ V TT    
Sbjct: 29  KHVSHSETDFEVSNDEDNQLLELGYKPVFKREFSTWATFSFAFSISGL-FATVVTTYSYP 87

Query: 196 LLCGADYSVVQTTLWCRLLCGAG 264
           L+ G   S V    WC L+ GAG
Sbjct: 88  LISGGAPSAV----WCWLIAGAG 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,266,390
Number of Sequences: 5004
Number of extensions: 49522
Number of successful extensions: 131
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)