Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_C21
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0400 + 3169597-3170504,3170510-3171269                           27   5.6  
05_07_0350 - 29457444-29457871,29458786-29461456                       27   9.8  
03_06_0377 + 33498939-33499814                                         27   9.8  

>12_01_0400 + 3169597-3170504,3170510-3171269
          Length = 555

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +1

Query: 259 AGYSVVQTTLWCRLLCGAGYSVVQTTLWCRLLCGADYSVVQTTLWC 396
           +G+SV Q  +   L  G G+ VV        LC     ++  +LWC
Sbjct: 509 SGFSVAQGKMLAGLF-GGGFGVVHQEKGRLALCWKSRPLISVSLWC 553


>05_07_0350 - 29457444-29457871,29458786-29461456
          Length = 1032

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
 Frame = +1

Query: 115  SVVQTTLWCRLLCGAGYSVVQTTLWCRLLCGADYSVVQTT--LWCRLLCGAGYSVVQTTL 288
            +VV    W R  CG+G   V   L  RL  G D    + T   +  +LC   +SV + T+
Sbjct: 940  TVVDLVQWVRARCGSGKDGVWRVLDRRL--GGDVPAAEATHMFFVAMLCVQEHSVERPTM 997


>03_06_0377 + 33498939-33499814
          Length = 291

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +2

Query: 47  KSAVMGIVKC--DSFYVGSRCVQTTLWCRLLCGADYSVVQATLWCRLLCGAD 196
           K A   +V C   + + G  CV +  W + L G   S+    L  + LC AD
Sbjct: 27  KGAAQNLVTCLYQAQFSGRPCVISVTWSKSLMGQGLSIGVDDLSNQCLCKAD 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,303,837
Number of Sequences: 37544
Number of extensions: 409121
Number of successful extensions: 946
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 902
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)