Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_C21
         (465 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U62639-1|AAD09364.1|  925|Caenorhabditis elegans lr protein.           32   0.18 
U62281-1|AAD09363.1|  925|Caenorhabditis elegans lipoprotein rec...    32   0.18 
AF185706-1|AAD56241.1|  925|Caenorhabditis elegans yolk receptor...    32   0.18 
AF036703-1|AAB88554.3|  925|Caenorhabditis elegans Receptor medi...    32   0.18 

>U62639-1|AAD09364.1|  925|Caenorhabditis elegans lr protein.
          Length = 925

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +1

Query: 22  VPSNE--KSIKECCNGDCEMRFILRRQSMRADYSVVQTTLWCRLLCGAGYSVVQTTLWC 192
           +P N     IKEC  GD E +        R D++ + T    R +C  GY +    L C
Sbjct: 279 IPMNATCNGIKECPLGDDESKHCSECARKRCDHTCMNTPHGARCICQEGYKLADDGLTC 337


>U62281-1|AAD09363.1|  925|Caenorhabditis elegans lipoprotein
           receptor precursor protein.
          Length = 925

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +1

Query: 22  VPSNE--KSIKECCNGDCEMRFILRRQSMRADYSVVQTTLWCRLLCGAGYSVVQTTLWC 192
           +P N     IKEC  GD E +        R D++ + T    R +C  GY +    L C
Sbjct: 279 IPMNATCNGIKECPLGDDESKHCSECARKRCDHTCMNTPHGARCICQEGYKLADDGLTC 337


>AF185706-1|AAD56241.1|  925|Caenorhabditis elegans yolk receptor
           RME-2 protein.
          Length = 925

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +1

Query: 22  VPSNE--KSIKECCNGDCEMRFILRRQSMRADYSVVQTTLWCRLLCGAGYSVVQTTLWC 192
           +P N     IKEC  GD E +        R D++ + T    R +C  GY +    L C
Sbjct: 279 IPMNATCNGIKECPLGDDESKHCSECARKRCDHTCMNTPHGARCICQEGYKLADDGLTC 337


>AF036703-1|AAB88554.3|  925|Caenorhabditis elegans Receptor
           mediated endocytosis protein2 protein.
          Length = 925

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +1

Query: 22  VPSNE--KSIKECCNGDCEMRFILRRQSMRADYSVVQTTLWCRLLCGAGYSVVQTTLWC 192
           +P N     IKEC  GD E +        R D++ + T    R +C  GY +    L C
Sbjct: 279 IPMNATCNGIKECPLGDDESKHCSECARKRCDHTCMNTPHGARCICQEGYKLADDGLTC 337


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,467,418
Number of Sequences: 27780
Number of extensions: 331862
Number of successful extensions: 825
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)