Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_C20
         (462 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   6.5  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    21   8.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.5  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +2

Query: 209 PRKPPRQINQLHTYIQHNLCTAATCHVNL*RRYYLVTSHRLMYVH*K 349
           PR     IN     +Q  +   A  H      Y  ++SH L YV+ K
Sbjct: 232 PRYTKYTINDESFSLQDGILGMALSHKTQNLYYSAMSSHNLNYVNTK 278


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = +3

Query: 402 HL*RHTSPSKYYCKH 446
           H+  HT    Y+C H
Sbjct: 28  HMRLHTGEKPYHCSH 42


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 13/61 (21%), Positives = 23/61 (37%)
 Frame = +2

Query: 215 KPPRQINQLHTYIQHNLCTAATCHVNL*RRYYLVTSHRLMYVH*KIRYNFCTAATYLYVL 394
           +PP +IN ++    +      T   N+ +         L + +   R  F   A YL  +
Sbjct: 28  RPPGEINSINPINVYTKAYIYTIKSNMAKTLQFDVHMMLQFRYLDARLKFSNIAPYLNQI 87

Query: 395 Y 397
           Y
Sbjct: 88  Y 88


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,879
Number of Sequences: 438
Number of extensions: 2515
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)