Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_C19
         (504 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    31   0.13 
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c...    26   3.7  
SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr...    25   8.5  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 226  DMSILNMYFCIVSGANVGKSPQSVWLRQRLITITG-SFRRVELTSAILEVLRPFT 387
            D+S+L  YF   +G  +  +PQS+ L+     I+      V+LT ++  +L P T
Sbjct: 2925 DVSVLEQYFSWSTGITLVAAPQSLILQDLPTAISALKITHVDLTPSLASILTPKT 2979


>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 176 SNYPYIKYN*VIKSIILKYALM*VLQFVWGRFD 78
           SN+PY KYN V    I K   + +L    GR D
Sbjct: 89  SNFPYYKYNGVWDRSIQKVVYLYLLASWTGRLD 121


>SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 239

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 240 EYVFLYCFGCKCRKVPTKCLAATAPYHDN 326
           +Y FLYC  CK   +   C   +  + D+
Sbjct: 66  DYAFLYCSNCKFPHIKGLCQICSNSHPDD 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,874,520
Number of Sequences: 5004
Number of extensions: 33358
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)