Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_C19
         (504 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    28   4.4  
U53153-9|AAC69041.1|  511|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = -2

Query: 380  GRRTSKMAEVNSTRLKEPVIVIRRCRSQTLCGDFPTFAPETIQ 252
            G+R S +  +    +  PV+V R+C +   C  F +F P  ++
Sbjct: 3139 GQRNSVLTSITQLLIFSPVVVQRQCLNSLEC-IFASFTPSNVE 3180


>U53153-9|AAC69041.1|  511|Caenorhabditis elegans Hypothetical
           protein T19A5.5 protein.
          Length = 511

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
 Frame = +3

Query: 204 LCHALFLRHEYFEY-VFLYC-FGCKCRKVPTKCLAATAPYHDNWF 332
           L  A FL  + F Y V   C F C  + +  KCL    P H N F
Sbjct: 95  LYFATFLNLQLFRYSVQPRCIFQCSPKLISEKCLVCDQPSHGNHF 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,269,579
Number of Sequences: 27780
Number of extensions: 185592
Number of successful extensions: 388
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)