Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_C18
(582 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr... 175 4e-45
SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|... 175 4e-45
SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces pomb... 175 4e-45
SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr 2|||... 67 2e-12
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 26 4.6
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 26 4.6
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 25 6.1
>SPAC1834.04 |hht1||histone H3 h3.1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 136
Score = 175 bits (426), Expect = 4e-45
Identities = 84/88 (95%), Positives = 88/88 (100%)
Frame = +2
Query: 86 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 265
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 266 LLIRKLPFQRLVREIAQDFKTDLRFQSA 349
LLIRKLPFQRLVREIAQDFKTDLRFQS+
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSS 88
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = +1
Query: 442 CAIPLPKRVTIMPKDIQLARRIRGERA 522
CAI KRVTI PKD+QLARR+RGER+
Sbjct: 111 CAIH-GKRVTIQPKDMQLARRLRGERS 136
>SPBC8D2.04 |hht2|h3.2|histone H3 h3.2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 136
Score = 175 bits (426), Expect = 4e-45
Identities = 84/88 (95%), Positives = 88/88 (100%)
Frame = +2
Query: 86 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 265
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 266 LLIRKLPFQRLVREIAQDFKTDLRFQSA 349
LLIRKLPFQRLVREIAQDFKTDLRFQS+
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSS 88
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = +1
Query: 442 CAIPLPKRVTIMPKDIQLARRIRGERA 522
CAI KRVTI PKD+QLARR+RGER+
Sbjct: 111 CAIH-GKRVTIQPKDMQLARRLRGERS 136
>SPBC1105.11c |hht3|h3.3|histone H3 h3.3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 136
Score = 175 bits (426), Expect = 4e-45
Identities = 84/88 (95%), Positives = 88/88 (100%)
Frame = +2
Query: 86 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 265
MARTKQTARKSTGGKAPRKQLA+KAARK+AP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 266 LLIRKLPFQRLVREIAQDFKTDLRFQSA 349
LLIRKLPFQRLVREIAQDFKTDLRFQS+
Sbjct: 61 LLIRKLPFQRLVREIAQDFKTDLRFQSS 88
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = +1
Query: 442 CAIPLPKRVTIMPKDIQLARRIRGERA 522
CAI KRVTI PKD+QLARR+RGER+
Sbjct: 111 CAIH-GKRVTIQPKDMQLARRLRGERS 136
>SPBC1105.17 |cnp1|sim2|CENP-A|Schizosaccharomyces pombe|chr
2|||Manual
Length = 120
Score = 66.9 bits (156), Expect = 2e-12
Identities = 33/58 (56%), Positives = 45/58 (77%), Gaps = 4/58 (6%)
Frame = +2
Query: 161 ARKSAPSTGG--VKKPH--RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF 322
A+KS + G + +P RYRPGT ALREIR+YQ+ST+LLI++LPF R+VREI+ +F
Sbjct: 2 AKKSLMAEPGDPIPRPRKKRYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEF 59
Score = 35.1 bits (77), Expect = 0.008
Identities = 18/24 (75%), Positives = 20/24 (83%)
Frame = +1
Query: 442 CAIPLPKRVTIMPKDIQLARRIRG 513
CAI KRVTIM +D+QLARRIRG
Sbjct: 97 CAIHA-KRVTIMQRDMQLARRIRG 119
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 25.8 bits (54), Expect = 4.6
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 191 VKKPHRYRPGTVALRE-IRRYQKSTELLIRKLPFQRLVREIA 313
+ + HR + +L E + +++ S LLI P Q +RE+A
Sbjct: 507 IDEAHRLKNSESSLYEALSQFKNSNRLLITGTPLQNNIRELA 548
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 4.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 227 ALREIRRYQKSTELLIRKLPFQR 295
A RE+++ ++ EL++ LPFQR
Sbjct: 340 APREVKQIEQPKELVLNLLPFQR 362
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 25.4 bits (53), Expect = 6.1
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 427 KHQPFCAIPLPKRVTIMPKDIQLARRIRGERA*INVL 537
KH + + LPKR I+ + L R+ + IN L
Sbjct: 207 KHPAYSFVTLPKREEILKRPASLHSRVESTNSFINQL 243
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,220,411
Number of Sequences: 5004
Number of extensions: 41918
Number of successful extensions: 109
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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