Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_C17
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomy...   109   2e-25
SPAC29A4.03c |||mitochondrial ribosomal protein subunit S9|Schiz...    28   0.68 
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    27   1.6  
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos...    27   1.6  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    24   8.4  

>SPAC144.04c |spe1||ornithine decarboxylase Spe1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score =  109 bits (262), Expect = 2e-25
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 10/142 (7%)
 Frame = +3

Query: 21  GSAHSSLREVSQVINTALEVHFPERSVRVIAEPGRYFAAAAYTLATMIYAKREVVGKDSE 200
           G  + S   V+ +I +AL+ +F + S+RVI+EPGR+F ++++TLA  + AKR++      
Sbjct: 266 GFMNDSFDGVADLIRSALDTYF-DPSIRVISEPGRFFVSSSFTLAVNVIAKRKL------ 318

Query: 201 GEDEMHTMYFINDGVYGSFNCILYDHQHVVAEPLNVSCE---------RSSPCSVWGPTC 353
            +DE   MY++NDGVYGS NCIL+DHQH VA  L                  C +WGPTC
Sbjct: 319 -DDEEKVMYYVNDGVYGSLNCILFDHQHPVARVLKCGSRFVYNDLVGTGQHRCFIWGPTC 377

Query: 354 DGLDCVVAATRLP-AMSLAEWV 416
           D LD +     LP  +++ +W+
Sbjct: 378 DSLDVIANDAHLPYELNVGDWI 399


>SPAC29A4.03c |||mitochondrial ribosomal protein subunit
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 27.9 bits (59), Expect = 0.68
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = -1

Query: 227 VHRVHLILPLAV---LTHHLSFGVYHGGEGVCRGGEVPARFS 111
           VHR H + PLA    LT++  +   HGG    + G V A  S
Sbjct: 45  VHRKHAVYPLAACNRLTNYNVWATVHGGGPTGQSGAVHAAIS 86


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -1

Query: 356 VASRAPHRTRRRALTTHI*RFSDDVLMIVENAVEGPVHTIVYEVHRVHLILPLAVLTHHL 177
           VA RA    R R   +   RF++   + +E   E  V  +VYE     L+LP+ +L   L
Sbjct: 237 VAIRAEDLERARTRPSRTDRFNETFEIDLEKTNE--VEIVVYEKKNEKLLLPVGLLWIRL 294

Query: 176 S 174
           S
Sbjct: 295 S 295


>SPAC694.06c |mrc1||mediator of replication checkpoint 1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1019

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 189 KDSEGEDEMHTMYFINDGVYGSFNCILYDHQHVVAEPLNVSCERSSPCSVW 341
           KDS+  +E+H  + IND V  S +  + + Q   ++   V    S P   W
Sbjct: 570 KDSQKTEELHDSFGINDEVDQSTSLYVQNSQPSASQLTIVDATYSQPPPRW 620


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +3

Query: 303 NVSCERSSPCSVWGPTCDGLDCVVA 377
           +VSC+ +   S+W P+  GL  + A
Sbjct: 227 SVSCDLTDSYSLWDPSSSGLVSIYA 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,607,049
Number of Sequences: 5004
Number of extensions: 27911
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)