Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_C17
         (419 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   1.8  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   5.6  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     20   9.9  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
 Frame = +3

Query: 108 IAEPGRYFAAAAYTLATMI------YAKREVVGKDSEGEDEMH 218
           +A P  + A++A  LA  +      + +R   G  S G+DE+H
Sbjct: 513 VAPPSGHHASSAPLLAATLAGGLCPHRRRANSGSTSSGDDELH 555


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = -1

Query: 113 SDDAHAALREVHFECRVDHLRHLTKARVGRSREPAPR 3
           S D   ++   +   R D  RH+  A V  S    PR
Sbjct: 405 SPDGFESVTSQYKNIREDDARHIPHASVTDSENTVPR 441


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 335 RTRRRALTTHI*RFSDD 285
           +TRRRAL   + RF +D
Sbjct: 200 KTRRRALEHTLDRFHND 216


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,474
Number of Sequences: 438
Number of extensions: 1819
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)