Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_C16
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb...    30   0.28 
SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    27   2.0  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    26   4.6  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    25   6.1  

>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 29.9 bits (64), Expect = 0.28
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 61  LEDGPKRYTIGRTLIPRYFRSIYEGGVSELYYTMRQPKESFHNTSI 198
           ++DG    T+G  ++ + F S++ GG   +Y T  +  ESF  T++
Sbjct: 60  IDDGAWSSTLG-PILSQAFASVHPGGTLRVYSTADEADESFEMTAL 104


>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +1

Query: 355 IPRQAVHPPDHASLDQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRH 504
           I +Q VH    + L+++ KNI  +   + +L  LRL  +L  +Q  + ++
Sbjct: 234 IDQQIVHKEHISHLEKIWKNINEESSEDPSLLLLRLEFLLTDLQTAIRKY 283


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/43 (27%), Positives = 19/43 (44%)
 Frame = +1

Query: 109 RYFRSIYEGGVSELYYTMRQPKESFHNTSITLDCDHCTMVTHH 237
           R  RS Y GG+  +YY  +    ++H    T+       + HH
Sbjct: 32  RICRSSYVGGLHAIYYFPKLNPRNYHKFVDTISRKPTRKLVHH 74


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +1

Query: 358 PRQAVHPPDHASLDQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYAL 519
           P    +P D + L QL      +   N T+ Y ++CV L   + L +   AY L
Sbjct: 339 PLDCKNPEDISLLYQLATGEDSKFYVNGTIEYEQICVNLCSNEPLNAIKHAYLL 392


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,268,306
Number of Sequences: 5004
Number of extensions: 44242
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)