Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_C16
         (582 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0658 + 5342508-5343602,5343697-5343764,5343994-5344042,534...    36   0.024
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532...    36   0.024
05_03_0184 + 9339939-9340896,9341003-9341083,9341166-9341383,934...    27   8.2  
05_01_0512 - 4259162-4259849,4260209-4260432,4260854-4261071,426...    27   8.2  

>11_01_0658 +
           5342508-5343602,5343697-5343764,5343994-5344042,
           5344217-5344333,5344438-5344506,5344631-5344725,
           5345580-5345658,5346499-5346563,5347368-5347461,
           5347675-5347744,5348363-5349357
          Length = 931

 Score = 35.9 bits (79), Expect = 0.024
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +1

Query: 256 KVCTEGRLILEFTFDDLMRIKSWHMAVRAHRELIPRQAVHP 378
           +V  EG L + F  D  ++I SW    R H ELIPR+++ P
Sbjct: 427 RVVREGHLRIVFNPD--LKIASWEFCARRHEELIPRRSIIP 465


>11_01_0657 +
           5322295-5323367,5323436-5323555,5323743-5323791,
           5323968-5324084,5324200-5324268,5324394-5324488,
           5325183-5325521,5327043-5327084,5327814-5327907,
           5328121-5328190,5328719-5329677
          Length = 1008

 Score = 35.9 bits (79), Expect = 0.024
 Identities = 17/41 (41%), Positives = 24/41 (58%)
 Frame = +1

Query: 256 KVCTEGRLILEFTFDDLMRIKSWHMAVRAHRELIPRQAVHP 378
           +V  EG L + F  D  ++I SW    R H ELIPR+++ P
Sbjct: 437 RVVREGHLRIVFNPD--LKIASWEFCARRHEELIPRRSIIP 475


>05_03_0184 +
           9339939-9340896,9341003-9341083,9341166-9341383,
           9341796-9342019,9342409-9343096
          Length = 722

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 451 YLRLCVILEPMQELMSRHKAYALPPRDCLKTTLFQSGSGWSRLL 582
           +L+ CV L+P Q+   R +  + PPR  L   +F     W  ++
Sbjct: 566 WLQKCV-LQPAQDRRRRKRKVSFPPRHALSPPIFVLCRDWLAMM 608


>05_01_0512 -
           4259162-4259849,4260209-4260432,4260854-4261071,
           4261154-4261234,4261342-4262299
          Length = 722

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +1

Query: 451 YLRLCVILEPMQELMSRHKAYALPPRDCLKTTLFQSGSGWSRLL 582
           +L+ CV L+P Q+   R +  + PPR  L   +F     W  ++
Sbjct: 566 WLQKCV-LQPAQDRWRRKRKVSFPPRHALSPPIFVLCRDWLTMM 608


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,083,698
Number of Sequences: 37544
Number of extensions: 328365
Number of successful extensions: 780
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)