Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_C16
(582 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81017-3|CAB54257.1| 629|Caenorhabditis elegans Hypothetical pr... 104 4e-23
Z81017-2|CAB02672.1| 578|Caenorhabditis elegans Hypothetical pr... 104 4e-23
Z81017-1|CAB02669.1| 592|Caenorhabditis elegans Hypothetical pr... 104 4e-23
U80221-1|AAB38367.1| 579|Caenorhabditis elegans F58A3.1b protein. 104 4e-23
U80220-1|AAB38366.1| 592|Caenorhabditis elegans F58A3.1a protein. 104 4e-23
AL132863-8|CAB60576.2| 519|Caenorhabditis elegans Hypothetical ... 29 3.2
Z99942-6|CAI79199.1| 119|Caenorhabditis elegans Hypothetical pr... 28 5.6
>Z81017-3|CAB54257.1| 629|Caenorhabditis elegans Hypothetical
protein F58A3.1c protein.
Length = 629
Score = 104 bits (250), Expect = 4e-23
Identities = 66/192 (34%), Positives = 102/192 (53%), Gaps = 10/192 (5%)
Frame = +1
Query: 10 FATEFFEDDATLTLTFCLED----GPKRYTIGRTLIPRYFRSIYEGGVSELYYTMRQPKE 177
F+ EFF+DD L E +RY I R IP++FRSI++ G+ EL Y +R P
Sbjct: 130 FSHEFFDDDCKLWFVIGSEPVAFASRERYIINRQFIPKFFRSIFDSGMRELQYVLRGPSR 189
Query: 178 --SFHNTSITLDCDHCTMVTHHGKPIFTKVCTEGRLILEFT-FDDLM--RIKSWHMAVRA 342
+ N S + ++ +T + + +V TEG+L +EF FD++M RIK+W + ++
Sbjct: 190 ECTLANGSQAYENENVLQITRYDQSSQFEVNTEGKLYVEFAPFDEVMNYRIKAWTLELKR 249
Query: 343 HRELIPRQAVHPPDHASLDQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHK-AYAL 519
E + Q + + +N R G ST N + + IL+PMQ +MS K A A+
Sbjct: 250 SNEFVYNQNTADYRVEAQNPEQENKPRMGFFKSTFNLMTMLKILDPMQSIMSSAKSAPAI 309
Query: 520 PPRDCLKTTLFQ 555
PR+ +K TLFQ
Sbjct: 310 TPREVMKRTLFQ 321
>Z81017-2|CAB02672.1| 578|Caenorhabditis elegans Hypothetical
protein F58A3.1b protein.
Length = 578
Score = 104 bits (250), Expect = 4e-23
Identities = 66/192 (34%), Positives = 102/192 (53%), Gaps = 10/192 (5%)
Frame = +1
Query: 10 FATEFFEDDATLTLTFCLED----GPKRYTIGRTLIPRYFRSIYEGGVSELYYTMRQPKE 177
F+ EFF+DD L E +RY I R IP++FRSI++ G+ EL Y +R P
Sbjct: 79 FSHEFFDDDCKLWFVIGSEPVAFASRERYIINRQFIPKFFRSIFDSGMRELQYVLRGPSR 138
Query: 178 --SFHNTSITLDCDHCTMVTHHGKPIFTKVCTEGRLILEFT-FDDLM--RIKSWHMAVRA 342
+ N S + ++ +T + + +V TEG+L +EF FD++M RIK+W + ++
Sbjct: 139 ECTLANGSQAYENENVLQITRYDQSSQFEVNTEGKLYVEFAPFDEVMNYRIKAWTLELKR 198
Query: 343 HRELIPRQAVHPPDHASLDQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHK-AYAL 519
E + Q + + +N R G ST N + + IL+PMQ +MS K A A+
Sbjct: 199 SNEFVYNQNTADYRVEAQNPEQENKPRMGFFKSTFNLMTMLKILDPMQSIMSSAKSAPAI 258
Query: 520 PPRDCLKTTLFQ 555
PR+ +K TLFQ
Sbjct: 259 TPREVMKRTLFQ 270
>Z81017-1|CAB02669.1| 592|Caenorhabditis elegans Hypothetical
protein F58A3.1a protein.
Length = 592
Score = 104 bits (250), Expect = 4e-23
Identities = 66/192 (34%), Positives = 102/192 (53%), Gaps = 10/192 (5%)
Frame = +1
Query: 10 FATEFFEDDATLTLTFCLED----GPKRYTIGRTLIPRYFRSIYEGGVSELYYTMRQPKE 177
F+ EFF+DD L E +RY I R IP++FRSI++ G+ EL Y +R P
Sbjct: 93 FSHEFFDDDCKLWFVIGSEPVAFASRERYIINRQFIPKFFRSIFDSGMRELQYVLRGPSR 152
Query: 178 --SFHNTSITLDCDHCTMVTHHGKPIFTKVCTEGRLILEFT-FDDLM--RIKSWHMAVRA 342
+ N S + ++ +T + + +V TEG+L +EF FD++M RIK+W + ++
Sbjct: 153 ECTLANGSQAYENENVLQITRYDQSSQFEVNTEGKLYVEFAPFDEVMNYRIKAWTLELKR 212
Query: 343 HRELIPRQAVHPPDHASLDQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHK-AYAL 519
E + Q + + +N R G ST N + + IL+PMQ +MS K A A+
Sbjct: 213 SNEFVYNQNTADYRVEAQNPEQENKPRMGFFKSTFNLMTMLKILDPMQSIMSSAKSAPAI 272
Query: 520 PPRDCLKTTLFQ 555
PR+ +K TLFQ
Sbjct: 273 TPREVMKRTLFQ 284
>U80221-1|AAB38367.1| 579|Caenorhabditis elegans F58A3.1b protein.
Length = 579
Score = 104 bits (250), Expect = 4e-23
Identities = 66/192 (34%), Positives = 102/192 (53%), Gaps = 10/192 (5%)
Frame = +1
Query: 10 FATEFFEDDATLTLTFCLED----GPKRYTIGRTLIPRYFRSIYEGGVSELYYTMRQPKE 177
F+ EFF+DD L E +RY I R IP++FRSI++ G+ EL Y +R P
Sbjct: 80 FSHEFFDDDCKLWFVIGSEPVAFASRERYIINRQFIPKFFRSIFDSGMRELQYVLRGPSR 139
Query: 178 --SFHNTSITLDCDHCTMVTHHGKPIFTKVCTEGRLILEFT-FDDLM--RIKSWHMAVRA 342
+ N S + ++ +T + + +V TEG+L +EF FD++M RIK+W + ++
Sbjct: 140 ECTLANGSQAYENENVLQITRYDQSSQFEVNTEGKLYVEFAPFDEVMNYRIKAWTLELKR 199
Query: 343 HRELIPRQAVHPPDHASLDQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHK-AYAL 519
E + Q + + +N R G ST N + + IL+PMQ +MS K A A+
Sbjct: 200 SNEFVYNQNTADYRVEAQNPEQENKPRMGFFKSTFNLMTMLKILDPMQSIMSSAKSAPAI 259
Query: 520 PPRDCLKTTLFQ 555
PR+ +K TLFQ
Sbjct: 260 TPREVMKRTLFQ 271
>U80220-1|AAB38366.1| 592|Caenorhabditis elegans F58A3.1a protein.
Length = 592
Score = 104 bits (250), Expect = 4e-23
Identities = 66/192 (34%), Positives = 102/192 (53%), Gaps = 10/192 (5%)
Frame = +1
Query: 10 FATEFFEDDATLTLTFCLED----GPKRYTIGRTLIPRYFRSIYEGGVSELYYTMRQPKE 177
F+ EFF+DD L E +RY I R IP++FRSI++ G+ EL Y +R P
Sbjct: 93 FSHEFFDDDCKLWFVIGSEPVAFASRERYIINRQFIPKFFRSIFDSGMRELQYVLRGPSR 152
Query: 178 --SFHNTSITLDCDHCTMVTHHGKPIFTKVCTEGRLILEFT-FDDLM--RIKSWHMAVRA 342
+ N S + ++ +T + + +V TEG+L +EF FD++M RIK+W + ++
Sbjct: 153 ECTLANGSQAYENENVLQITRYDQSSQFEVNTEGKLYVEFAPFDEVMNYRIKAWTLELKR 212
Query: 343 HRELIPRQAVHPPDHASLDQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHK-AYAL 519
E + Q + + +N R G ST N + + IL+PMQ +MS K A A+
Sbjct: 213 SNEFVYNQNTADYRVEAQNPEQENKPRMGFFKSTFNLMTMLKILDPMQSIMSSAKSAPAI 272
Query: 520 PPRDCLKTTLFQ 555
PR+ +K TLFQ
Sbjct: 273 TPREVMKRTLFQ 284
>AL132863-8|CAB60576.2| 519|Caenorhabditis elegans Hypothetical
protein Y37H2A.7 protein.
Length = 519
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +1
Query: 121 SIYEGGVSELYYTMRQPKESFHNTSITLDCDH 216
S+ E G+S+LY M+ PK S +T C++
Sbjct: 174 SVVEAGLSDLYRIMKNPKFSLETLDVTF-CEY 204
>Z99942-6|CAI79199.1| 119|Caenorhabditis elegans Hypothetical
protein H13N06.7 protein.
Length = 119
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = -2
Query: 572 DHPLPLWKSVVLRQSRGGSAYALCRDISSCIGSSITHNLK*LSVEL 435
++P W + +R RG S + +C++ SC ++I + + ++L
Sbjct: 76 EYPTRKWTLLFIR--RGSSLFKICKNYCSCTNATINSTSREIKIKL 119
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,892,764
Number of Sequences: 27780
Number of extensions: 263766
Number of successful extensions: 592
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -