Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0006_C14
(476 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0158 - 1103461-1104186 73 2e-13
08_01_0202 - 1638978-1639571 72 2e-13
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753... 30 1.1
11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142 29 2.6
10_08_0021 + 14217455-14217505,14217742-14217909,14219137-142193... 28 3.4
07_03_0592 + 19805647-19805817,19805960-19806332,19807347-19807474 28 3.4
01_05_0718 - 24575946-24576121,24576721-24576874,24576964-245770... 28 3.4
03_02_0961 + 12759701-12760054,12760294-12760420,12760719-127611... 28 4.5
09_04_0213 + 15706638-15707915 27 7.8
09_02_0515 + 10121849-10122149,10132151-10132187,10132314-101327... 27 7.8
06_03_0404 - 20460555-20462135 27 7.8
03_06_0157 - 32039020-32039175,32039267-32039338,32039478-320396... 27 7.8
01_06_0247 + 27851206-27851255,27851382-27851496,27852280-278524... 27 7.8
01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547 27 7.8
>02_01_0158 - 1103461-1104186
Length = 241
Score = 72.5 bits (170), Expect = 2e-13
Identities = 39/81 (48%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Frame = +2
Query: 191 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVA 370
A + GTVKWFN G+GFI+ +D ED+FVHQ++I RS+ +GE VEFA+
Sbjct: 4 AARHRGTVKWFNDTKGFGFISPDDGSEDLFVHQSSI----KADGFRSLAEGEQVEFAISE 59
Query: 371 GEKG-YEAARVTGPGGESVKG 430
E G +A VTGP G VKG
Sbjct: 60 SEDGRTKAVDVTGPDGSFVKG 80
>08_01_0202 - 1638978-1639571
Length = 197
Score = 72.1 bits (169), Expect = 2e-13
Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 1/81 (1%)
Frame = +2
Query: 191 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVA 370
+E+V GTVKWF+ G+GFI +D ED+FVHQ+++ RS+ DG+ VEF+V +
Sbjct: 3 SERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSL----KSDGYRSLNDGDVVEFSVGS 58
Query: 371 GEKG-YEAARVTGPGGESVKG 430
G G +A VT PGG ++ G
Sbjct: 59 GNDGRTKAVDVTAPGGGALTG 79
>05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,
7535889-7535932,7536042-7536146,7536223-7536344,
7536807-7536894,7536966-7537052,7537718-7537786,
7537859-7538188,7539777-7539824,7540003-7540069,
7540150-7540208,7541220-7541453,7541536-7541601,
7541684-7541883,7542104-7542197,7542295-7542414,
7542596-7542703,7542808-7542871,7543378-7543409,
7546049-7548007
Length = 1407
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -1
Query: 311 GCFGLSQFDVQTHLLWCHS 255
GC+GL QF ++ LL CHS
Sbjct: 1107 GCYGLPQFRMRVFLLGCHS 1125
>11_04_0383 - 17004520-17005150,17005205-17005327,17005641-17007142
Length = 751
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +2
Query: 212 VKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEA 391
V W+ G + ++ A + NPR+A + D + E AVV G YE+
Sbjct: 439 VFWWGDDEGESSAAARRWLDALYAAMEAAVSGNPREAFVNYRDLDIGENAVVGGVTEYES 498
Query: 392 AR 397
AR
Sbjct: 499 AR 500
>10_08_0021 +
14217455-14217505,14217742-14217909,14219137-14219340,
14219429-14219601,14219970-14220066,14220183-14220336,
14222029-14222209,14222858-14222898,14223146-14223231,
14223282-14223389,14223538-14223579
Length = 434
Score = 28.3 bits (60), Expect = 3.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 322 SLARVVSDYRSLMYKHIFFGVIPIDETISTL 230
SL R+ DY L Y+H +PI+ET+ L
Sbjct: 115 SLERLAVDYIDLYYQHRIDQSVPIEETMGEL 145
>07_03_0592 + 19805647-19805817,19805960-19806332,19807347-19807474
Length = 223
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +2
Query: 290 TAIIRNNPRKAVRSVGDGEAVEFAVVAG 373
TAI+ N AV +VGD AV F V AG
Sbjct: 68 TAILINGETLAVANVGDSRAVAFDVRAG 95
>01_05_0718 -
24575946-24576121,24576721-24576874,24576964-24577060,
24577142-24577314,24577426-24577629,24577725-24577892,
24577938-24578084
Length = 372
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -2
Query: 322 SLARVVSDYRSLMYKHIFFGVIPIDETISTL 230
SL R+ DY L Y+H IPI++TI L
Sbjct: 147 SLGRLGVDYIDLYYQHRVDTTIPIEDTIGEL 177
>03_02_0961 +
12759701-12760054,12760294-12760420,12760719-12761167,
12761369-12761590,12761672-12761980,12762092-12762430,
12762504-12762584,12762661-12762756,12762846-12763220,
12763400-12763531,12763962-12764132
Length = 884
Score = 27.9 bits (59), Expect = 4.5
Identities = 18/77 (23%), Positives = 34/77 (44%)
Frame = +2
Query: 224 NVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEAARVT 403
+V+ G ++ ++ ++D+F II+N RK VG + KG + +
Sbjct: 581 DVQIGTALLDDDEPQDDLFKSFDDIIKNPGRKTTVEVGMLADNSWKKFKSSKGNDGSNTN 640
Query: 404 GPGGESVKGSPYAADKR 454
G +S Y AD++
Sbjct: 641 GDIDKSTVKVSYMADQK 657
>09_04_0213 + 15706638-15707915
Length = 425
Score = 27.1 bits (57), Expect = 7.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 356 FAVVAGEKGYEAARVTGPGGESVKGSPYAADKRRS 460
FA+ G G + + G G KGSPY AD R+
Sbjct: 216 FAMAGGGGGGQPNKTGGFGFAFPKGSPYVADLSRA 250
>09_02_0515 +
10121849-10122149,10132151-10132187,10132314-10132790,
10133184-10133733
Length = 454
Score = 27.1 bits (57), Expect = 7.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +2
Query: 200 VSGTVKWFNVKSGYGFINRNDTKE 271
V+ VKW +KSG F N KE
Sbjct: 195 VAAAVKWLKIKSGQAFAVENYVKE 218
>06_03_0404 - 20460555-20462135
Length = 526
Score = 27.1 bits (57), Expect = 7.8
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 260 DTKEDVFVHQTAIIRNNPRKAVRSVGDGEAVEFAVVAGEKGYEAARVTG 406
D ++V + +NPR A + D + E AV G YE RV G
Sbjct: 440 DWIKNVHAFMEPFVTSNPRDAYVNYRDLDIGENAVAGGVTSYENGRVWG 488
>03_06_0157 -
32039020-32039175,32039267-32039338,32039478-32039602,
32039678-32040559,32040623-32040692,32041248-32041739,
32041985-32042044,32042541-32042618,32043322-32044344
Length = 985
Score = 27.1 bits (57), Expect = 7.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 341 GEAVEFAVVAGEKGYEAARVTGPGGESVKG 430
GE+ E ++ GE E V GPGGE G
Sbjct: 388 GESKEDEIIEGEPDPEMEVVAGPGGEPKVG 417
>01_06_0247 +
27851206-27851255,27851382-27851496,27852280-27852468,
27853698-27854057,27854138-27854201,27854365-27854504,
27854610-27854918,27855135-27855389
Length = 493
Score = 27.1 bits (57), Expect = 7.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +2
Query: 302 RNNPRKAVRSVGDGEAVEFAVVAGEKGYEAAR 397
+N+P K S+GD +AVE + G+ +AR
Sbjct: 17 KNSPTKGSLSLGDLDAVEVLPASATAGWSSAR 48
>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
Length = 388
Score = 27.1 bits (57), Expect = 7.8
Identities = 17/38 (44%), Positives = 17/38 (44%)
Frame = +2
Query: 323 VRSVGDGEAVEFAVVAGEKGYEAARVTGPGGESVKGSP 436
VR G G A FAV G A R G GGE SP
Sbjct: 53 VRGGGGGGAALFAVPRLFVGLAAKRGAGDGGEPASRSP 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,660,193
Number of Sequences: 37544
Number of extensions: 190207
Number of successful extensions: 751
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 979080328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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