Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_C11
         (310 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    26   1.1  
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    25   2.6  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    24   5.9  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    23   7.9  

>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 207 HGCALNTQARVQFASAVQDF 148
           H   L+   R+QFASA+ DF
Sbjct: 385 HALLLSIDQRIQFASAIHDF 404


>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 250 DDRTTHEVXGXHWLARLR 197
           +D TT E  G  W+ RLR
Sbjct: 256 NDHTTKETDGSKWMGRLR 273


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 23.8 bits (49), Expect = 5.9
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +3

Query: 228 TSWVVRSSSKEINGLY 275
           TS+ V SSS+E +GLY
Sbjct: 154 TSFTVPSSSREFSGLY 169


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 23.4 bits (48), Expect = 7.9
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 185 CVFKAQPC*PVAPTYLMGRSIVK 253
           CV     C  + PTYL+ R++++
Sbjct: 293 CVTALYDCCQLLPTYLINRNLIR 315


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.132    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 997,824
Number of Sequences: 5004
Number of extensions: 12411
Number of successful extensions: 33
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 79841814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)