Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_C11
         (310 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0203 + 12640502-12641074                                         29   0.98 
03_05_1137 + 30652967-30653183,30653281-30653485,30653696-306537...    28   1.7  
02_02_0428 + 10127620-10127662,10128618-10128717,10128773-10129808     28   1.7  
08_02_0039 - 11512553-11512822,11512920-11513171,11513784-115139...    27   4.0  
06_01_1034 + 8110347-8110943,8111201-8111512,8111841-8112011,811...    27   4.0  
07_03_0149 - 14452654-14452666,14452943-14454699,14454886-144549...    26   5.2  
02_05_0584 - 30135768-30135790,30136104-30136866                       26   5.2  
04_04_0423 - 25102305-25102489,25102571-25102717,25103079-251031...    26   6.9  
06_03_0989 - 26663060-26663203,26663649-26663760,26664015-26664274     25   9.2  
04_03_0204 + 12643435-12644001                                         25   9.2  

>04_03_0203 + 12640502-12641074
          Length = 190

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 96  RWTDGDRLSAAAPPSMCC 43
           RW D D  S AAPP  CC
Sbjct: 121 RWYDRDGDSCAAPPGRCC 138


>03_05_1137 +
           30652967-30653183,30653281-30653485,30653696-30653786,
           30653904-30654046,30654186-30654429,30654536-30654640,
           30654985-30655167,30655255-30655459,30655552-30656036
          Length = 625

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 6   HEGSIGRSCGNGNSTWRGAP 65
           H   +GR CG    TW+G P
Sbjct: 439 HADDLGRQCGGWTITWQGQP 458


>02_02_0428 + 10127620-10127662,10128618-10128717,10128773-10129808
          Length = 392

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 33  GNGNSTWRGAPPP 71
           GNG S+W G PPP
Sbjct: 180 GNGTSSWSGRPPP 192


>08_02_0039 -
           11512553-11512822,11512920-11513171,11513784-11513951,
           11519429-11519622,11519774-11519795,11519928-11520239,
           11520497-11520826,11520855-11521069,11523106-11523151,
           11523207-11523290
          Length = 630

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 222 PXTSWVVRSSSKEINGLYH 278
           P T+W+V S+  ++NG  H
Sbjct: 155 PYTTWIVSSTKDQVNGTLH 173


>06_01_1034 +
           8110347-8110943,8111201-8111512,8111841-8112011,
           8112780-8114576
          Length = 958

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 222 PXTSWVVRSSSKEINGLYH 278
           P T+W+V S+  ++NG  H
Sbjct: 128 PYTTWIVSSAKDQVNGTLH 146


>07_03_0149 -
           14452654-14452666,14452943-14454699,14454886-14454990,
           14455808-14455978,14456309-14456641,14456900-14457492,
           14458864-14458906
          Length = 1004

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 222 PXTSWVVRSSSKEINGLYH 278
           P T+W+V S+  ++NG  H
Sbjct: 142 PCTTWIVSSAKDQVNGTLH 160


>02_05_0584 - 30135768-30135790,30136104-30136866
          Length = 261

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = -1

Query: 79  PSVGGGAPLHVLFPLPQ-DRPIEP 11
           PS G G P  + FPLPQ   P +P
Sbjct: 144 PSSGSGLPFPLPFPLPQPSSPAQP 167


>04_04_0423 -
           25102305-25102489,25102571-25102717,25103079-25103150,
           25103305-25103327,25103792-25103863,25104064-25104112,
           25104344-25104415,25104880-25104951,25105281-25105352,
           25106569-25106640,25106810-25106881,25106974-25107048,
           25107324-25107470,25107598-25107805,25108361-25108489,
           25108563-25108769
          Length = 557

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +3

Query: 150 NLVQR*QTELVPAYSKRNRANQWXPXTSWVVRSSSKEINGLYH 278
           +L+Q  +T+ +  +  R+   QW   + W+V  SS+ + GL H
Sbjct: 389 SLMQTSETKKLGTFRHRSW-EQWTSSSLWMVFLSSQGLTGLTH 430


>06_03_0989 - 26663060-26663203,26663649-26663760,26664015-26664274
          Length = 171

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +3

Query: 51  WRGAPPPTDG 80
           W GAPPP DG
Sbjct: 162 WHGAPPPPDG 171


>04_03_0204 + 12643435-12644001
          Length = 188

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = -2

Query: 99  RRWTDGDRLSAAAPPSMCCFRCRRIV 22
           RRW D D    AAPP   C    ++V
Sbjct: 125 RRWYDRDAGRCAAPPGRTCGAYTQVV 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.132    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,518,971
Number of Sequences: 37544
Number of extensions: 104780
Number of successful extensions: 328
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 328
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 375959444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)