Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0006_C11
         (310 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81533-7|CAB04330.1|  290|Caenorhabditis elegans Hypothetical pr...    27   2.7  
AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical ...    27   3.5  
Z92803-13|CAB07249.2|  331|Caenorhabditis elegans Hypothetical p...    26   6.2  
AL021482-4|CAA16341.2|  331|Caenorhabditis elegans Hypothetical ...    26   6.2  

>Z81533-7|CAB04330.1|  290|Caenorhabditis elegans Hypothetical
           protein F36G9.11 protein.
          Length = 290

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = -1

Query: 79  PSVGGGAPLHVLF--PLPQDRPIEPSC 5
           P VG   P+H     PLP  +P+ P+C
Sbjct: 87  PIVGAEKPVHTTLSAPLPTPKPLPPAC 113


>AL132864-1|CAB63392.1|  613|Caenorhabditis elegans Hypothetical
           protein Y53H1A.1 protein.
          Length = 613

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +3

Query: 39  GNSTWRGAPPP 71
           G  TWRGAPPP
Sbjct: 106 GADTWRGAPPP 116


>Z92803-13|CAB07249.2|  331|Caenorhabditis elegans Hypothetical
           protein K01G5.9 protein.
          Length = 331

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 3   RHEGSIGRSCGNGNSTW 53
           +H G +G SC  G+ TW
Sbjct: 183 KHSGRLGHSCVYGSGTW 199


>AL021482-4|CAA16341.2|  331|Caenorhabditis elegans Hypothetical
           protein K01G5.9 protein.
          Length = 331

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 3   RHEGSIGRSCGNGNSTW 53
           +H G +G SC  G+ TW
Sbjct: 183 KHSGRLGHSCVYGSGTW 199


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.132    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,736,480
Number of Sequences: 27780
Number of extensions: 74961
Number of successful extensions: 130
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 333802358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)